FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_EHRCJ (50S ribosomal protein L2 OS=Ehrlichia canis (strain Jake) GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 64/185 (34.59%), Postives = 94/185 (50.81%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 +R +DF + V + +DP R A +A +++ +K IA G+ G V G+ + ++ GN L ++SIP G V NVE G+ GV+AR++G YA ++S D ++L SG + + S CRA IG V+ L KAG RN W P VRGVAMNP++H Sbjct: 62 YRIIDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGEGSDILPGNCLMLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGVYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RNRWLGIRPTVRGVAMNPIDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_DESRM (50S ribosomal protein L2 OS=Desulfotomaculum reducens (strain MI-1) GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 59/181 (32.60%), Postives = 89/181 (49.17%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 FR +DF + VA I +DP R A +A + + +K +A G+ G V G A + VGN LP+R+IP G +V N+E + G + R++G A +++ + ++LPSG +++ CRA IGQV + KAG + H P VRG MNPV+H Sbjct: 62 FRIIDFKRNKDGIPAKVASIEYDPNRSARIALLNYADG-----EKRYILAPVGLEVGVIVESGPDADIKVGNCLPLRNIPVGTMVHNIELYPGAGAQMVRSAGAAAQLMA--KEGKYANLRLPSGEMRLVLQECRATIGQVGNLEHENVTIGKAGRSRH-----LGIRPTVRGKVMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_CHLTE (50S ribosomal protein L2 OS=Chlorobium tepidum GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 58/185 (31.35%), Postives = 95/185 (51.35%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 +R +DF + VA I +DP R A +A + + +K +A + + G + G+K + VGN +P+++IP G+ V N+E +G G +AR++G YAV+ + + + +K+PSG + + CRA IG + L KAG R+ W P+ RG+AMNPV+H Sbjct: 62 YRIIDFKRNKDNVPAKVAAIEYDPNRSARIALLHYVDG-----EKRYILAPKNLKVGDRIESGEKVDIKVGNTMPLKNIPIGSDVHNIELKIGKGGQIARSAGAYAVLAAR--EGNYATLKMPSGEIRKVRIECRATIGVIGNAEHENISLGKAG---------RSRWLGIRPQTRGMAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BACLD (50S ribosomal protein L2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 67/208 (32.21%), Postives = 101/208 (48.56%), Query Frame = 2 Query: 101 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 ++ G + K H+ G Q+R +DF + G VA + +DP R A +A + + +K +A +G+ G + G +A + VGN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +H Sbjct: 39 KKGGRNNQGKLTVRHQGGGHKRQYRIIDFKRDKDGIPGRVATVEYDPNRSANIALINYVDG-----EKRYILAPKGLQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_BACA2 (50S ribosomal protein L2 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 67/208 (32.21%), Postives = 101/208 (48.56%), Query Frame = 2 Query: 101 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 ++ G + K H+ G Q+R +DF + G VA + +DP R A +A + + +K +A +G+ G + G +A + VGN LP+ +IP G VV N+E G G L R++G A ++ + V+L SG ++I S CRA IGQV G + L+ G A R+ W P VRG MNP +H Sbjct: 39 KKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYVDG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQV---GNEQHELINVGKA------GRSRWKGIRPTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_ALKMQ (50S ribosomal protein L2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 62/195 (31.79%), Postives = 98/195 (50.26%), Query Frame = 2 Query: 128 KSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 K HR G + +R +DF + VA + +DP R A +A + + +K IA +G+ G+ ++ G ++ + VGN LP+ +IP G ++ N+E G G +AR++G+ A +++ + V+LPSG + I CRA IGQV + KAG + K P VRG AMNP +H Sbjct: 48 KITVRHRGGGLKRHYRIIDFKRNKDDIPAKVASVEYDPNRTANIALLHYVDG-----EKRYIIAPKGLKVGEMIFSGPESDIKVGNALPLINIPVGTIIHNIEMKPGKGGQIARSAGNSAQLMA--KEGRYALVRLPSGEVRQILIECRATIGQVGNLDHENVTIGKAGR-----KRKMGIRPTVRGSAMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_ACIAD (50S ribosomal protein L2 OS=Acinetobacter sp. (strain ADP1) GN=rplB PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 68/219 (31.05%), Postives = 104/219 (47.49%), Query Frame = 2 Query: 62 LSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 L K ++ A+++ G H T H G +R +DF + VV I +DP R A +A + + ++ IA +G+ G V G A + GN LP+R++P G+ + NVE +G LAR++G ++ D V+L SG + I CRA+IG+V+ + L KAG + R P VRG+AMNPV+H Sbjct: 24 LHKGKPFAALVEAKKRTGGRNNNGHITTRHVGGGHKQHYRLVDFKRNKDGIPAVVERIEYDPNRTAHIALLKYADG-----ERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGTSVQLLGR--DGSYAIVRLRSGEMRKIHVECRAVIGEVSNQENNLRSLGKAGASRW-----RGVRPTVRGMAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 61/190 (32.11%), Postives = 95/190 (50.00%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ +P G + N+E G G LARA+G A +I+ + + +KLPSG ++I C A +GQV G +K L +AG+ ++ KR P VRGV MNPV+H Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDH 228
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18 Identity = 63/192 (32.81%), Postives = 97/192 (50.52%), Query Frame = 2 Query: 137 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 + HR G + +R +DF + G +A I +DP R + + +K+ + +GM G V +A + +GN LP+ ++P G + NVE G G LARA+G A II+ + ++LPSG ++I C A IGQV + + KAG+ ++ KR PKVRGV MNP++H Sbjct: 51 SRHRGGGHKRIYRKIDFLRDKKDIFGRIATIEYDPNRNTFICLTYYEDG-----EKKYILYPQGMRIGDSVVSSTEAPISIGNALPLTNMPLGTAIHNVEITPGKGGQLARAAGAVAKIIA--KEGRLATLRLPSGEVRLISQKCLATIGQVGNSDANNRTIGKAGS--KRWLGKR---PKVRGVVMNPIDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_STACT (50S ribosomal protein L2 OS=Staphylococcus carnosus (strain TM300) GN=rplB PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18 Identity = 69/226 (30.53%), Postives = 107/226 (47.35%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVI--RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 A+ +P K + + + RA R G + H H Q+R +DF + V I +DP R A +A + + +K IA +G+ GQ + G++A + GN LP+ +IP G + N+E G G +AR++G A ++ + V+L SG ++I S CRA +GQV G + L+ G A R+ W P VRG MNP +H Sbjct: 22 AEITKTTPEKSLLQPLPKRAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGIPAKVDSIQYDPNRSANIALLVYADG-----EKRYIIAPKGLQVGQTIENGEEADIKTGNALPLANIPVGTTIHNIELKPGRGGQIARSAGASAQVL--GKEGKYVLVRLRSGEVRMILSTCRATVGQV---GNLQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDH 230 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |