FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_VEREI (50S ribosomal protein L2 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 69/226 (30.53%), Postives = 104/226 (46.02%), Query Frame = 2
Query:   35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEH 706
            H P  + Q     +     I  + KG G     H HH      +R +DF      +   V  I +DP R A +A V +        ++   IA   +  G  +  G +A +  GN LP+R+IP G+ +  +E   G    +AR++G  A +++   +    +V++ SG  + I   CRA IG+VA    + + L KAG       VKR     P VRGVAMNPV+H
Sbjct:   30 HAPLLEPQFQKAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIAAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATLLSGAEAPIRAGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGASATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 66/215 (30.70%), Postives = 103/215 (47.91%), Query Frame = 2
Query:   68 PSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            P K + + I  ++KG  +       HR G  +  +R +DF      + G V  + +DP R A +  V +        +K   +A   +  G  +  G +A   +GN +P+  IP G VV NVE + G  G + RA+G  A +++   +     +KLPSG  ++I   C A IGQ+         L KAG +  ++  +R   PKVRG  MNPV+H
Sbjct:   35 PEKSLLQFIH-RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDH 236          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYNFM (50S ribosomal protein L2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 68/224 (30.36%), Postives = 107/224 (47.77%), Query Frame = 2
Query:   50 QAQSLSPSKEMGRVIRAQ--RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +  ++ P K +   +R    R  +G V   H    H R+    +R +DF      +   VA I +DP R + +A + +        +K   IA  G+  G  V  G +A +  GN L + ++P G ++ NVE   G  G LAR++G    +I+   +     ++LPS   +++P  C+A +GQV         L KAG    ++  KR   P VRGVAMNPV+H
Sbjct:   23 ELSNVEPEKSLLEPLRRSGGRNASGRVTSWHRGGGHKRR----YRIIDFKRNKENIPATVASIEYDPNRSSHIALLKYADG-----EKRYIIAPVGLSVGDTVLTGAEADIKPGNCLRLANMPLGTIIHNVELKPGKGGQLARSAGSSIQLIA--KEGTHAILRLPSSEMRMVPISCKATVGQVGNIDHENLSLGKAGR--KRWLGKR---PHVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_STRU0 (50S ribosomal protein L2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 63/185 (34.05%), Postives = 91/185 (49.19%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            +R +DF      ++ VV  I +DP R A +A V +         K   IA +G+  GQ +  G +A + +GN LP+ +IP G V+ N+E   G  G L RA+G  A ++    +     V+L SG  ++I   CRA IG V   G  ++ L+  G A       RN W    P VRG  MNP +H
Sbjct:   62 YRVIDFKRNKDNVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIISGPEADIKIGNALPLANIPVGTVIHNIEMKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATIGSV---GNEQQSLVNIGKA------GRNRWKGVRPTVRGSVMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEPA (50S ribosomal protein L2 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +R +DF      +   V  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN LP+R+IP G+VV  VE        +AR++G Y  +I+   D     ++L SG  + +P  CRA +G+V       + L KAG      +  R   P VRGVAMNPV+H
Sbjct:   62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYILAAKGMKAGDKIQSGIDAEIKSGNALPLRNIPVGSVVHAVEMKPAKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G  +  +R +DF  +   +  VV  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++SIP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNP++H
Sbjct:   53 HRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG-----EYSYILAPQKLSIGDRVISSQAADIKIGNCLPLKSIPIGTTLHNVEMKVGKGGQIARSAGTSVELV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPIDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RHOCS (50S ribosomal protein L2 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 70/211 (33.18%), Postives = 101/211 (47.87%), Query Frame = 2
Query:   92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAA-EGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            I A+R G G       H R+    +R +DF  R    +   V  + +DP R A +A +      RY      +I A + +  G  V  G+K  +  GN +P+R+IP G +V NVE   G  G LARA+G Y  ++    D    ++KLPSG  +++   C A IG V+   +    + KAG         RN W    P VRGV MNP++H
Sbjct:   49 ITARRMGGG-------HKRR----YRLVDFKRRMKPDMPATVERLEYDPNRTAFIALI------RYTDGTLAYILAPQRLKAGDTVVSGEKVDVKPGNAMPLRNIPVGTIVHNVELKPGKGGQLARAAGTYLQLVGR--DQGYAQLKLPSGELRVVRGECFATIGAVSNPDQANVVIGKAG---------RNRWLGRRPSVRGVVMNPIDH 231          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            HR G  +  +R +DF      +   VA I +DP R A +A + +        +K   IA  G+  GQ V  G  A +  GN LP+++IP G ++ N+E +    G L R++G  A +++   +     +++PSG  +++   CRA IGQV   G  E   +  G A  K  +     P VRGV MNPV+H
Sbjct:   53 HRGGGHKRLYRIIDFKRDKDGIPAKVASIEYDPNRSARIALLHYADG-----EKRYIIAPAGLEVGQTVVSGPDADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMA--KEGKYANIRMPSGEMRLLLQECRATIGQV---GNVEHENITIGKAGRKRWL--GIRPTVRGVVMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 62/196 (31.63%), Postives = 95/196 (48.47%), Query Frame = 2
Query:  137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            T H+ G    ++R +DF      + G +A I +DP R A +  V +        +K   + A+GM  G  +   + A + VGN  P+++IPEG ++ NVE   G  G +AR++G    I+  + D     ++L SG  + + + C A IG+V   G  E  L+  G A       RN W    P VRG  MNP +H
Sbjct:   52 TRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDG-----EKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNIPEGTLIHNVELKPGKGGQMARSAGTSVQILGKDDDGKYVTLRLTSGEVRKVLADCYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDH 233          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 69/211 (32.70%), Postives = 101/211 (47.87%), Query Frame = 2
Query:   86 RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            ++ R  R   G +   H   R     +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G  A ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         R+ W    P VRGVAMNP++H
Sbjct:   37 KISRGGRNSRGVITVRH-RGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDH 230          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_VEREI1.237e-1730.5350S ribosomal protein L2 OS=Verminephrobacter eise... [more]
RL2_SYNJB1.237e-1730.7050S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_SYNFM1.237e-1730.3650S ribosomal protein L2 OS=Syntrophobacter fumaro... [more]
RL2_STRU01.237e-1734.0550S ribosomal protein L2 OS=Streptococcus uberis (... [more]
RL2_SHEPA1.237e-1733.1550S ribosomal protein L2 OS=Shewanella pealeana (s... [more]
RL2_RICTY1.237e-1731.9650S ribosomal protein L2 OS=Rickettsia typhi GN=rp... [more]
RL2_RHOCS1.237e-1733.1850S ribosomal protein L2 OS=Rhodospirillum centenu... [more]
RL2_PELTS1.237e-1732.6350S ribosomal protein L2 OS=Pelotomaculum thermopr... [more]
RL2_MESFL1.237e-1731.6350S ribosomal protein L2 OS=Mesoplasma florum GN=r... [more]
RL2_EHRCR1.237e-1732.7050S ribosomal protein L2 OS=Ehrlichia chaffeensis ... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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