FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_VEREI (50S ribosomal protein L2 OS=Verminephrobacter eiseniae (strain EF01-2) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 69/226 (30.53%), Postives = 104/226 (46.02%), Query Frame = 2 Query: 35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKR--NCWPKVRGVAMNPVEH 706 H P + Q + I + KG G H HH +R +DF + V I +DP R A +A V + ++ IA + G + G +A + GN LP+R+IP G+ + +E G +AR++G A +++ + +V++ SG + I CRA IG+VA + + L KAG VKR P VRGVAMNPV+H Sbjct: 30 HAPLLEPQFQKAGRNNNGHITTRHKGGG-----HKHH------YRVVDFKRNKDGIAAKVERIEYDPNRTAHIALVCYADG-----ERRYIIAPRNLEVGATLLSGAEAPIRAGNTLPIRNIPVGSTIHCIELKPGAGAQIARSAGASATLLAR--EGTYAQVRMRSGEVRKIHIECRATIGEVANEEHSLRQLGKAG-------VKRWMGIRPTVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 66/215 (30.70%), Postives = 103/215 (47.91%), Query Frame = 2 Query: 68 PSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 P K + + I ++KG + HR G + +R +DF + G V + +DP R A + V + +K +A + G + G +A +GN +P+ IP G VV NVE + G G + RA+G A +++ + +KLPSG ++I C A IGQ+ L KAG + ++ +R PKVRG MNPV+H Sbjct: 35 PEKSLLQFIH-RKKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDG-----EKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERIPLGTVVHNVELYPGRGGQMVRAAGAGAQVVAR--EGKYVSLKLPSGEVRMIRGECYATIGQLGNVDHNNISLGKAGRS--RWLGRR---PKVRGSVMNPVDH 236
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYNFM (50S ribosomal protein L2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 68/224 (30.36%), Postives = 107/224 (47.77%), Query Frame = 2 Query: 50 QAQSLSPSKEMGRVIRAQ--RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 + ++ P K + +R R +G V H H R+ +R +DF + VA I +DP R + +A + + +K IA G+ G V G +A + GN L + ++P G ++ NVE G G LAR++G +I+ + ++LPS +++P C+A +GQV L KAG ++ KR P VRGVAMNPV+H Sbjct: 23 ELSNVEPEKSLLEPLRRSGGRNASGRVTSWHRGGGHKRR----YRIIDFKRNKENIPATVASIEYDPNRSSHIALLKYADG-----EKRYIIAPVGLSVGDTVLTGAEADIKPGNCLRLANMPLGTIIHNVELKPGKGGQLARSAGSSIQLIA--KEGTHAILRLPSSEMRMVPISCKATVGQVGNIDHENLSLGKAGR--KRWLGKR---PHVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_STRU0 (50S ribosomal protein L2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 63/185 (34.05%), Postives = 91/185 (49.19%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 +R +DF ++ VV I +DP R A +A V + K IA +G+ GQ + G +A + +GN LP+ +IP G V+ N+E G G L RA+G A ++ + V+L SG ++I CRA IG V G ++ L+ G A RN W P VRG MNP +H Sbjct: 62 YRVIDFKRNKDNVEAVVKTIEYDPNRTANIALVHYTDGV-----KAYIIAPKGLEVGQRIISGPEADIKIGNALPLANIPVGTVIHNIEMKPGKGGELVRAAGASAQVLGQ--EGKYVLVRLQSGEVRMILGTCRATIGSV---GNEQQSLVNIGKA------GRNRWKGVRPTVRGSVMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SHEPA (50S ribosomal protein L2 OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 60/181 (33.15%), Postives = 90/181 (49.72%), Query Frame = 2 Query: 164 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +R +DF + V + +DP R A +A V + ++ +AA+GM G + G A + GN LP+R+IP G+VV VE +AR++G Y +I+ D ++L SG + +P CRA +G+V + L KAG + R P VRGVAMNPV+H Sbjct: 62 YRLIDFKRNKDGIPAKVERLEYDPNRTANIALVLYADG-----ERRYILAAKGMKAGDKIQSGIDAEIKSGNALPLRNIPVGSVVHAVEMKPAKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATLGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 62/194 (31.96%), Postives = 98/194 (50.52%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G + +R +DF + + VV I +DP R A +A + + + +A + + G V + A + +GN LP++SIP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG RN W P VRGVAMNP++H Sbjct: 53 HRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG-----EYSYILAPQKLSIGDRVISSQAADIKIGNCLPLKSIPIGTTLHNVEMKVGKGGQIARSAGTSVELV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPIDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RHOCS (50S ribosomal protein L2 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 70/211 (33.18%), Postives = 101/211 (47.87%), Query Frame = 2 Query: 92 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGER-NGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAA-EGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 I A+R G G H R+ +R +DF R + V + +DP R A +A + RY +I A + + G V G+K + GN +P+R+IP G +V NVE G G LARA+G Y ++ D ++KLPSG +++ C A IG V+ + + KAG RN W P VRGV MNP++H Sbjct: 49 ITARRMGGG-------HKRR----YRLVDFKRRMKPDMPATVERLEYDPNRTAFIALI------RYTDGTLAYILAPQRLKAGDTVVSGEKVDVKPGNAMPLRNIPVGTIVHNVELKPGKGGQLARAAGTYLQLVGR--DQGYAQLKLPSGELRVVRGECFATIGAVSNPDQANVVIGKAG---------RNRWLGRRPSVRGVVMNPIDH 231
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 62/190 (32.63%), Postives = 95/190 (50.00%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 HR G + +R +DF + VA I +DP R A +A + + +K IA G+ GQ V G A + GN LP+++IP G ++ N+E + G L R++G A +++ + +++PSG +++ CRA IGQV G E + G A K + P VRGV MNPV+H Sbjct: 53 HRGGGHKRLYRIIDFKRDKDGIPAKVASIEYDPNRSARIALLHYADG-----EKRYIIAPAGLEVGQTVVSGPDADIKAGNCLPLKNIPVGTMIHNIELYPNGGGKLVRSAGASAQLMA--KEGKYANIRMPSGEMRLLLQECRATIGQV---GNVEHENITIGKAGRKRWL--GIRPTVRGVVMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 62/196 (31.63%), Postives = 95/196 (48.47%), Query Frame = 2 Query: 137 THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 T H+ G ++R +DF + G +A I +DP R A + V + +K + A+GM G + + A + VGN P+++IPEG ++ NVE G G +AR++G I+ + D ++L SG + + + C A IG+V G E L+ G A RN W P VRG MNP +H Sbjct: 52 TRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDG-----EKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNIPEGTLIHNVELKPGKGGQMARSAGTSVQILGKDDDGKYVTLRLTSGEVRKVLADCYATIGEV---GNEEYNLVNWGKA------GRNRWRGIRPTVRGSVMNPNDH 233
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_EHRCR (50S ribosomal protein L2 OS=Ehrlichia chaffeensis (strain Arkansas) GN=rplB PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 69/211 (32.70%), Postives = 101/211 (47.87%), Query Frame = 2 Query: 86 RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 ++ R R G + H R +R +DF + V + +DP R A +A +++ +K IA G+ G V G A ++ GN L ++SIP G V NVE G+ GV+AR++G YA ++S D ++L SG + + S CRA IG V+ L KAG R+ W P VRGVAMNP++H Sbjct: 37 KISRGGRNSRGVITVRH-RGRGHKRLYRVVDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGDGADILPGNCLLLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGMYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RSRWLGIRPTVRGVAMNPIDH 230 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |