FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 62/195 (31.79%), Postives = 94/195 (48.21%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS-IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ + +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+H
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 229          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 62/196 (31.63%), Postives = 94/196 (47.96%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS--IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+ +  +P G  + N+E  +G  G LARA+G  A +I+    + T R  LPSG  ++I   C A +GQV   G  +K L +AG+          CW    P VRGV MNPV+H
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TRIEI (50S ribosomal protein L2 OS=Trichodesmium erythraeum (strain IMS101) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 67/222 (30.18%), Postives = 108/222 (48.65%), Query Frame = 2
Query:   47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            A+     P K + +  R ++KG  +       HR G  +  +R +DF      +   VA I +DP R A +A + ++       +K   +   G+  GQ +  G  A L +GN LP+  IP G  V NVE   G  G + R++G  A +++   ++    +KLPSG ++ + + C A +GQ+         L KAG   ++++ KR   P VRG  MNPV+H
Sbjct:   22 AEVTKSRPEKTLVK-FRHRKKGRNNRGVVTCRHRGGGTKKLYRVVDFHRNKHNIPAKVAAIEYDPYRNARIALLHYQDG-----EKRYILHPLGLKVGQLITSGVNAPLEIGNALPLSKIPLGTDVHNVELVPGKGGQMVRSAGAVAQVVA--KEDQYVTIKLPSGERRKVRASCYATLGQIGNIEHRNISLGKAGR--NRWKGKR---PTVRGSVMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 72/221 (32.58%), Postives = 109/221 (49.32%), Query Frame = 2
Query:   65 SPSKEMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEII---HDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEH 706
            S   E   + R  RK   +V+   T  HR G     +R +DF +RN +  G+ A+++   +DP R   +A+V + +       K   +   G+  G  V  G  A + VGN LP+ +IP G +V N+E + G  G L R++G  A I++   +     ++LPSG ++ +   CRA +GQV         + KAG   H  FR      P VRGV MNPV+H
Sbjct:   26 STRPEKSLLERLTRKAGRNVYGRITVRHRGGGHKRMYRIIDF-KRNEF-DGIPAKVVSIEYDPNRTCRIAKVVYANG-----AKRYILHPVGLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDH 231          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+H
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGNRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 2
Query:  143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706
            HR G  +  +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   +    L KAG         RN W    P VRGVAMNPV+H
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKFIPTGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RALSO (50S ribosomal protein L2 OS=Ralstonia solanacearum GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 70/226 (30.97%), Postives = 107/226 (47.35%), Query Frame = 2
Query:   35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            H P  + Q     +     I  + KG G     H HH      +R +DF   +++G +   +  + +DP R A +A V F        ++   IA +G   GQ V  G +A +  GN LP+R+IP G  +  VE   G    +AR++G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGVAMNPV+H
Sbjct:   30 HAPLLEKQFQKSGRNNNGHITTRHKGGG-----HKHH------YRIVDFKRNDKDG-IPAKIERLEYDPNRSANIALVLFADG-----ERRYIIAPKGAVVGQAVANGPEAPIKAGNNLPIRNIPVGTTIHCVEILPGKGAQIARSAGTSAVLLAR--EGIYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRQIGKAGATRW-----RGIRPTVRGVAMNPVDH 231          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 67/216 (31.02%), Postives = 104/216 (48.15%), Query Frame = 2
Query:   65 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            +P K +  V    + G  +  K    HR G  +  +R +DF      + G VA I +DP R A +A + +        +K   +A +G+  G  +  GK+A + V N LP+ +IP G  V N+E   G  G +AR++G +  IIS   ++    ++L SG  + +   CRA IG++   G     L+  G A  K  +     P VRG AMNP +H
Sbjct:   28 TPEKRL-LVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDG-----EKRYILAPKGLTVGMQIVSGKEADIKVANCLPLMNIPVGTTVHNIELKPGKGGQIARSAGSFCQIISR--EDKYVLLRLQSGEVRKVLGTCRATIGEI---GNESYKLINYGKAGKKRFL--GIRPTVRGSAMNPNDH 230          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_OENOB (50S ribosomal protein L2 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 2
Query:  140 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706
            HH  G   Q+R +DF          V  I +DP R A +A + +         K   +A +G+  G  V  G  A + VGN LP+ +IPEG ++ N+E   G  G LAR++G  A I+  +       ++L SG  ++IP+  RA IG+V   G  E  L+  G A   ++R K    P VRG  MNP +H
Sbjct:   53 HHGGGHKQQYRIIDFKRIKDDKTATVKAIEYDPNRTANIALLVYEDGV-----KSYILAPKGLEAGTKVQSGPDADIKVGNALPLGNIPEGTLIHNIELKPGKGGQLARSAGTSAQILGKDDAGKYVIIRLSSGEVRMIPATSRATIGEV---GNAEHSLISWGKAGRSRWRGKT---PHVRGSVMNPNDH 232          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LACH4 (50S ribosomal protein L2 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 69/228 (30.26%), Postives = 105/228 (46.05%), Query Frame = 2
Query:   35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            H  ++    ++ +K    ++ +Q   AG     H    HR G    ++R +DF       K VV  I +DP R A +A + +         K   +A +G+  G  V  G    +  GN L +++IP G  + N+E   G  G L R++G  A ++    D D T V+L SG  + I S CRA IG V   G  +  L+K G A  K  + +   P+ RG  MNP +H
Sbjct:   15 HMTSSDFAEITKTKPEKTLLESQSHTAGRNSYGHITVRHRGGGHKQKYRIIDFKRNKDNTKAVVKAIEYDPNRTANIALLHYTDGI-----KAYILAPKGLKVGDIVESGDSVDIKPGNALALKNIPSGTSIHNIELKPGKGGQLVRSAGASAQVL--GVDGDYTLVRLQSGEVRKILSSCRATIGVV---GNEQHSLIKLGKAGRKRWLGKR--PQSRGSVMNPNDH 230          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_DIOEL1.237e-1731.7950S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2A_CHLSC1.237e-1731.6350S ribosomal protein L2-A, chloroplastic OS=Chlor... [more]
RL2_TRIEI1.616e-1730.1850S ribosomal protein L2 OS=Trichodesmium erythrae... [more]
RL2_SYMTH1.616e-1732.5850S ribosomal protein L2 OS=Symbiobacterium thermo... [more]
RL2_RICM51.616e-1731.4450S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RICFE1.616e-1731.4450S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_RALSO1.616e-1730.9750S ribosomal protein L2 OS=Ralstonia solanacearum... [more]
RL2_ONYPE1.616e-1731.0250S ribosomal protein L2 OS=Onion yellows phytopla... [more]
RL2_OENOB1.616e-1734.0350S ribosomal protein L2 OS=Oenococcus oeni (strai... [more]
RL2_LACH41.616e-1730.2650S ribosomal protein L2 OS=Lactobacillus helvetic... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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