FC930788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 62/195 (31.79%), Postives = 94/195 (48.21%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS-IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ + +P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+H Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCLATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 229
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17 Identity = 62/196 (31.63%), Postives = 94/196 (47.96%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRS--IPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G + +R +DF + G + I +DP R A + + + +K + G G + G + + +GN LP+ + +P G + N+E +G G LARA+G A +I+ + T R LPSG ++I C A +GQV G +K L +AG+ CW P VRGV MNPV+H Sbjct: 51 HRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPISMGNALPLSATDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLR--LPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_TRIEI (50S ribosomal protein L2 OS=Trichodesmium erythraeum (strain IMS101) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 67/222 (30.18%), Postives = 108/222 (48.65%), Query Frame = 2 Query: 47 AQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 A+ P K + + R ++KG + HR G + +R +DF + VA I +DP R A +A + ++ +K + G+ GQ + G A L +GN LP+ IP G V NVE G G + R++G A +++ ++ +KLPSG ++ + + C A +GQ+ L KAG ++++ KR P VRG MNPV+H Sbjct: 22 AEVTKSRPEKTLVK-FRHRKKGRNNRGVVTCRHRGGGTKKLYRVVDFHRNKHNIPAKVAAIEYDPYRNARIALLHYQDG-----EKRYILHPLGLKVGQLITSGVNAPLEIGNALPLSKIPLGTDVHNVELVPGKGGQMVRSAGAVAQVVA--KEDQYVTIKLPSGERRKVRASCYATLGQIGNIEHRNISLGKAGR--NRWKGKR---PTVRGSVMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_SYMTH (50S ribosomal protein L2 OS=Symbiobacterium thermophilum GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 72/221 (32.58%), Postives = 109/221 (49.32%), Query Frame = 2 Query: 65 SPSKEMGRVIRAQRKGAGSVFKSHT-HHRKG--PAQFRSLDFGERNGYLKGVVAEII---HDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYH-KFRVKRNCWPKVRGVAMNPVEH 706 S E + R RK +V+ T HR G +R +DF +RN + G+ A+++ +DP R +A+V + + K + G+ G V G A + VGN LP+ +IP G +V N+E + G G L R++G A I++ + ++LPSG ++ + CRA +GQV + KAG H FR P VRGV MNPV+H Sbjct: 26 STRPEKSLLERLTRKAGRNVYGRITVRHRGGGHKRMYRIIDF-KRNEF-DGIPAKVVSIEYDPNRTCRIAKVVYANG-----AKRYILHPVGLNVGDTVVSGPDADIKVGNALPLENIPVGTIVHNIELYPGRGGQLVRSAGASAQIMA--KEGRYALLRLPSGEQRKVLLACRATVGQVGNLEHENIVIGKAGRKRHLGFR------PAVRGVVMNPVDH 231
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G + +R +DF + +V I +DP R A +A + + + +A + + G V + A + +GN LP++ IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG RN W P VRGVAMNPV+H Sbjct: 53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGNRVISSQDADIKIGNCLPLKCIPIGTTLHNVEMQVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 61/194 (31.44%), Postives = 96/194 (49.48%), Query Frame = 2 Query: 143 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEH 706 HR G + +R +DF + +V I +DP R A +A + + + +A + + G V + A + +GN LP++ IP G + NVE VG G +AR++G ++ D+ ++KL SG +++P C+A IG ++ + L KAG RN W P VRGVAMNPV+H Sbjct: 53 HRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVISSQDADIKIGNCLPLKFIPTGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_RALSO (50S ribosomal protein L2 OS=Ralstonia solanacearum GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 70/226 (30.97%), Postives = 107/226 (47.35%), Query Frame = 2 Query: 35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 H P + Q + I + KG G H HH +R +DF +++G + + + +DP R A +A V F ++ IA +G GQ V G +A + GN LP+R+IP G + VE G +AR++G AV+++ + +V+L SG + + CRA IG+V + + + KAG R P VRGVAMNPV+H Sbjct: 30 HAPLLEKQFQKSGRNNNGHITTRHKGGG-----HKHH------YRIVDFKRNDKDG-IPAKIERLEYDPNRSANIALVLFADG-----ERRYIIAPKGAVVGQAVANGPEAPIKAGNNLPIRNIPVGTTIHCVEILPGKGAQIARSAGTSAVLLAR--EGIYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRQIGKAGATRW-----RGIRPTVRGVAMNPVDH 231
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 67/216 (31.02%), Postives = 104/216 (48.15%), Query Frame = 2 Query: 65 SPSKEMGRVIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 +P K + V + G + K HR G + +R +DF + G VA I +DP R A +A + + +K +A +G+ G + GK+A + V N LP+ +IP G V N+E G G +AR++G + IIS ++ ++L SG + + CRA IG++ G L+ G A K + P VRG AMNP +H Sbjct: 28 TPEKRL-LVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDG-----EKRYILAPKGLTVGMQIVSGKEADIKVANCLPLMNIPVGTTVHNIELKPGKGGQIARSAGSFCQIISR--EDKYVLLRLQSGEVRKVLGTCRATIGEI---GNESYKLINYGKAGKKRFL--GIRPTVRGSAMNPNDH 230
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_OENOB (50S ribosomal protein L2 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 2 Query: 140 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNA-YHKFRVKRNCWPKVRGVAMNPVEH 706 HH G Q+R +DF V I +DP R A +A + + K +A +G+ G V G A + VGN LP+ +IPEG ++ N+E G G LAR++G A I+ + ++L SG ++IP+ RA IG+V G E L+ G A ++R K P VRG MNP +H Sbjct: 53 HHGGGHKQQYRIIDFKRIKDDKTATVKAIEYDPNRTANIALLVYEDGV-----KSYILAPKGLEAGTKVQSGPDADIKVGNALPLGNIPEGTLIHNIELKPGKGGQLARSAGTSAQILGKDDAGKYVIIRLSSGEVRMIPATSRATIGEV---GNAEHSLISWGKAGRSRWRGKT---PHVRGSVMNPNDH 232
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_LACH4 (50S ribosomal protein L2 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplB PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 69/228 (30.26%), Postives = 105/228 (46.05%), Query Frame = 2 Query: 35 HQPAAQAQSLSPSKEMGRVIRAQRKGAGSVFKSH--THHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706 H ++ ++ +K ++ +Q AG H HR G ++R +DF K VV I +DP R A +A + + K +A +G+ G V G + GN L +++IP G + N+E G G L R++G A ++ D D T V+L SG + I S CRA IG V G + L+K G A K + + P+ RG MNP +H Sbjct: 15 HMTSSDFAEITKTKPEKTLLESQSHTAGRNSYGHITVRHRGGGHKQKYRIIDFKRNKDNTKAVVKAIEYDPNRTANIALLHYTDGI-----KAYILAPKGLKVGDIVESGDSVDIKPGNALALKNIPSGTSIHNIELKPGKGGQLVRSAGASAQVL--GVDGDYTLVRLQSGEVRKILSSCRATIGVV---GNEQHSLIKLGKAGRKRWLGKR--PQSRGSVMNPNDH 230 The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bpback to top |