FC930788

Overview
NameFC930788
Unique NameFC930788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930788_ssr20 microsatellite FC930788_ssr20:20..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12665 contig Ccv1_Contig12665:16..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.231e-33
Identity = 83/210 (39.52%), Postives = 115/210 (54.76%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG  I+ Q +G G   +++ +H  K  A+ + L  G     ++GV+ +I HDP R  P+A V      +    K   +  EG+  G  V  G +A +  GN LP+  IP G+ +CN+E   GD G   RASG  A+II    D     VK+PSG  K   S C A +G VAGGGR EKP +KAG  +HK + +   WP+VRGVAMN ++H
Sbjct:    1 MGHRIKTQNRGRGGPTYRAPSHQYK--AELKHL--GNDKVTVRGVIIDIEHDPARHTPIALVRLEGEGK----KVYLLVTEGLGVGDQVAWGPEAEVKNGNTLPISKIPTGSYICNIEARPGDGGKFVRASGVQAIIIDKTVDR--VGVKMPSGKMKWFSSRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METLZ (50S ribosomal protein L2P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.100e-33
Identity = 82/210 (39.05%), Postives = 114/210 (54.29%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG  I  Q +G G   +++ +H  K   +     FG     ++  V +I HDP R  P+A V      +   +KE  +  EG+  GQ +  G +AT++ GN LP+ +IP G  VCN+E   GD G   R+SG  AVII  +       V++PSG  K     C A +G VAGGGR +KP+LKAG  YHK +     WP+VRGVAMN ++H
Sbjct:    1 MGHRISTQSRGKGGPTYRAPSHQYKAELKH----FGSALETVRATVIDIEHDPARHTPIAVVKIEG--KASDKKEYALITEGVGIGQELVWGPEATVVNGNSLPLSAIPTGVAVCNIEARPGDGGKFVRSSGVQAVIIGKSAGK--VGVRMPSGKPKWFNEACLATVGLVAGGGRIDKPILKAGKQYHKMKTSATRWPRVRGVAMNVIDH 202          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.757e-32
Identity = 78/210 (37.14%), Postives = 112/210 (53.33%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG  I  Q +G G   +++ +H  K   +      G+    + G + +I HDP R AP+A V           K   +  EG+  G+ V  G    +  GN LP++SIP G+ +CN+E    D G   R++G  AV++  +   D   V++PSG  K   + CRA +G VAGGGR EKP +KAGN  HK R   + WP+VRGVAMN ++H
Sbjct:    1 MGHRITTQNRGRGGPTYRAPSHRYKAALKH----IGDGTKSISGSIIDIEHDPARNAPIALVQLEDG-----SKVYILVTEGIGIGETVAWGADVKVKNGNTLPLQSIPTGSYICNIESRPNDGGKFVRSTGVQAVVV--DKIGDRIGVRMPSGKTKWFNARCRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDH 199          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.505e-31
Identity = 79/210 (37.62%), Postives = 116/210 (55.24%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ +  QR G G++ F++    R G  ++ ++      G+    V +I+H+PG   P+A+V      ++        A +G+ +GQ +  G+ +   +GN++P + +PEG  V NVE H GD G  AR +G YA+++  +      R  LPSG  K I       +G VAGGG  EKPLLKAGN Y K++VK   WP VRGVAMN V H
Sbjct:    1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTI-----TGHHIAKVVDILHNPGMTEPVAKVKLDTGIQFF-----IPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKSEGKVILR--LPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVVSH 198          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 80/211 (37.91%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   80 MGRV-IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+V +  QR+G GS  F+S TH   G  +  + D       +KG V  +I D    APL  V + +       + L  A  G+  G  VY GK+A   +G++ P+  IPEG  +  +E++ GD G L RASGD+A+++      D   V+LPSG  K + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +H
Sbjct:    1 MGKVRLLVQRRGRGSPTFRSPTHRAAGKVKIPTFD----GDLVKGKVVALIKDSIHYAPLMVVKWENG-----AQSLLPAPLGISVGDTVYYGKEAPNAIGSIKPLSEIPEGTKIYMLENNPGDGGKLVRASGDFALLVQKL--GDKVIVQLPSGQFKTLSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 73/207 (35.27%), Postives = 104/207 (50.24%), Query Frame = 2
Query:   86 RVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            R+I   R   G  +++ +H  K   +      G+ +  + G V +I HDP R AP+A            +K   +A EG+  G  V  G   T+  GN LP+  IP GA VCN+E    D G   R+SG  A++I    D+    +++PSG  K     C A +G VAGGGR EKP +KAG  +   R     WP+V+GV MN ++H
Sbjct:    4 RIIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALARLDSG-----EKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNKWFNGACMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 75/210 (35.71%), Postives = 105/210 (50.00%), Query Frame = 2
Query:   80 MGRVIRAQRKG-AGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG  I  Q +G  G  +++ +H  K   +      G     +   + +I HDP R  P+A V          +    +  EGM  G  +  G  A +  GN LP++ IP G+ VCN+E +  D G   RASG  A +           V++PSG+ K     CRA IG VAGGGR+EKP +KAG  YHK +   + WP+VRG AMN ++H
Sbjct:    1 MGHRITTQSRGHGGPTYRAPSHRYKAALKH----LGRAGETVSYKIIDIEHDPARHTPIALVDVPDG-----ENTYVLVTEGMGIGDVLTWGADAEIRNGNTLPLQEIPTGSSVCNIEAYPNDGGKFVRASGVQATVTDKMEGR--VAVRMPSGSTKWFNGQCRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDH 199          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 72/210 (34.29%), Postives = 113/210 (53.81%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+    +R+G G + F++ T  +   A++ + + GE+    +G V +++H+ GR APLA++ F              A  G   G  +  G K+ +  GNV+ V++IP+G  VCNVE H GD G + +++G  A + SH        +KLPSG    +    RAM+G +AGGG +E+P + AG  + +FR K   +P VRGVA     H
Sbjct:    1 MGKRPLVRRRGRGGMQFRAATTGKIARAKYPAFELGEQR---EGTVIDLVHERGRDAPLAKIRFEDGI-----VSYVPAVLGTRVGSSMNFGLKSEIRDGNVISVQNIPDGTTVCNVEKHYGDGGAIVKSAGGNATVFSHGEGG--VVLKLPSGRFSTLNPKNRAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVH 200          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 72/211 (34.12%), Postives = 114/211 (54.03%), Query Frame = 2
Query:   80 MGRVIRAQRKG-AGSVFKSHTHHRKGP-AQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+    +R+G  G+ F+S +  + G  A +      E++   +G + +++H+ GR APLA+V F              A  G   G+ +  G K+ +  GNV+ +++IP+G +VCN+E H GD G + +++G  A + SH  +  T  VKLPSG    +    RAMIG +AGGG +E+P + AG  +  F+ K   +P VRGVA     H
Sbjct:    1 MGKRPLVRRRGRGGNQFRSTSTGKVGTKANYPRFPLSEQH---EGEIIDLVHERGREAPLAKVRFEDG-----SVSFVPAVLGAKVGETLQFGLKSKIEKGNVISIQNIPDGTIVCNIEKHFGDGGAIVKSAGTDATVFSHGDEGVT--VKLPSGKFTTLNPKNRAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVH 201          
BLAST of FC930788 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 77/210 (36.67%), Postives = 106/210 (50.48%), Query Frame = 2
Query:   80 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEH 706
            MG+ I  QR+G GS V++S +H        + L  GE       VV +IIH PGR +PL  +          +K   IA  G Y GQ +  G   T+  G    + +IP+G+ V N+E   GD G   R++G +A+++SH        +KLPSG+ +     CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V H
Sbjct:    1 MGKHIIPQRRGHGSLVYRSPSHRHV--VDVKHLKPGEY------VVKDIIHAPGRNSPLLELVDS-----TGKKVYQIAFTGAYVGQKIVAGNVDTINPGTTTVLANIPDGSYVYNIESSPGDGGEFCRSAGTFALVVSHG---SRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNH 194          
The following BLAST results are available for this feature:
BLAST of FC930788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METPE1.231e-3339.5250S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_METLZ2.100e-3339.0550S ribosomal protein L2P OS=Methanocorpusculum la... [more]
RL2_METB66.757e-3237.1450S ribosomal protein L2P OS=Methanoregula boonei ... [more]
RL2_METS51.505e-3137.6250S ribosomal protein L2P OS=Metallosphaera sedula... [more]
RL2_NANEQ1.193e-2837.9150S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]
RL2_METMJ1.193e-2835.2750S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_METHJ2.657e-2835.7150S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_CENSY2.938e-2734.2950S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_NITMS1.458e-2634.1250S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_THEVO1.365e-2436.6750S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]

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Properties
Property NameValue
Genbank descriptionC34109A09EF PostHarvP1 Citrus clementina cDNA clone C34109A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930788 ID=FC930788; Name=FC930788; organism=Citrus clementina; type=EST; length=708bp
GCATCTTCCCAATCCACACATATATATATATATTCATCAGCCTGCCGCAC
AAGCTCAGTCTCTTTCGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCA
CAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAA
GGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACC
TCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCG
CTGGCCCGAGTCACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGA
GCTTTTCATTGCCGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCG
GCAAGAAAGCCACTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATC
CCTGAAGGAGCTGTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGG
TGTTTTGGCTAGAGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACC
CCGATAATGACACCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATT
ATTCCAAGTGGCTGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAG
GACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAG
TGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTG
GAGCATCC
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