FC930789

Overview
NameFC930789
Unique NameFC930789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 56/202 (27.72%), Postives = 94/202 (46.53%), Query Frame = 1
Query:   55 RAEIRMAQPQQTESHSRQNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTL-EYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTN 657
            R  +R+A  + T      N+       ALVT  T G+G A+   L+   A V   SR +  +++ +  LQ +GL VTG+VC V     R+ L+     L +G ++I V+N   +    +L +   E +   +  N ++   + +   P +   G  S+V++SS      +   + Y+ +K A+  L   LA E A  NIR N
Sbjct:   12 RKSVRLASSRMTRRDPLTNK------VALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKL-HGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVN 206          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DCXR_HUMAN (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 58/190 (30.53%), Postives = 90/190 (47.37%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVC-DVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGA-ASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            L G   LVTG  KG+G   V+ L   GA V   SRT+ +L+  +   +  G++    VC D+      +  + +V     G +++ VNN   ++L+P LE   E F      N  +   + Q+    L A G   +IV +SS     +    +VY +TKGA++ L K +A E     IR N+V P  + T
Sbjct:    5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR--ECPGIE---PVCVDLGDWEATERALGSV-----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMT 184          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 56/194 (28.87%), Postives = 91/194 (46.91%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVG-----TSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTP 687
            L G  A+VTGG +G+G A+V   +  GA V   +  +    E +      G +V+   CDVS     +  ++   S   G+L+++ NN G     T   +  L ++A +F  V+  N   A    + A   +    A SIV ++S   ++       Y+A+K A+  L KN ACE     +R N V+P+ + TP
Sbjct:   53 LDGKVAIVTGGARGIGEAIVRLFAKHGARV-VIADIDDAAGEAL--ASALGPQVSFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLGRQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATP 243          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DH12A_XENLA (Estradiol 17-beta-dehydrogenase 12-A OS=Xenopus laevis GN=hsd17b12-A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 54/190 (28.42%), Postives = 89/190 (46.84%), Query Frame = 1
Query:  127 GMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFS----LVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            G  A+VTG T G+G A  EEL+  G ++   SR+  +L+E   H++ +  KV   +         +      + L + ++ + VNNVG S   P       D       +++ N  S   + +L  P +   G   I+ +SSA G+    + TVYSATK  ++  ++ L  E+    I   SV P+Y+ T
Sbjct:   54 GKWAVVTGATDGIGKAYAEELARRGMSIVLISRSPEKLDEAAKHIK-ETFKVETKIIAADFGKPTEIYERIEAGLRDLEIGVLVNNVGVSYEYPEYFLEIPDLENTLDKMININIMSVCQMTRLVLPGMLGRGKGVILNISSASGMYPVPLLTVYSATKAFVDFFSRGLHAEYRNKGINVQSVLPFYVAT 242          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: PECR_CAVPO (Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia porcellus GN=PECR PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 54/191 (28.27%), Postives = 91/191 (47.64%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQ-----MKGLKVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAH-PLLRASGAA--SIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAP 669
            LQ   A+VTGG  G+G A+ +EL  LG  V   SR    L      L+         +VT   C++    +   L+ +  +L+ GK++  VNN G          +++ +  V+ TN    F++C+ A+   ++  G A  +I+++ +    V+ +      A +G +  L K+LA  WA+  IR N VAP
Sbjct:   16 LQNRAAIVTGGGTGIGKAIAKELLHLGCNVVIASRKFDRLRAAAEELKATLPPSNKAEVTPIQCNIRKEEEVNNLMKSTLALY-GKIDFLVNNGGGQFWSSPEHISSKGWHAVIETNLTGTFYMCKAAYNSWMKEHGGAIVNIIILLNGQPFVAHS-----GAARGGVYNLTKSLALGWARSGIRINCVAP 200          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHB8_MOUSE (Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus GN=Hsd17b8 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 61/202 (30.20%), Postives = 96/202 (47.52%), Query Frame = 1
Query:  121 LQGMTALVTGGT-KGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGL-------KVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLA-HPLLRASGAASIVLMSSALGIVSANVG-TVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            L+   ALVTGG   G+G A+   L+  GA V  C        + +  L   G        K      DVS  P  + L+  V + F+   ++ V+  G +  +  L  + ED+  V++ N +  F + Q A   L+ + G  SI+ +SS +G V  N+G T Y+++K  +  L +  A E  +  IR NSV P +I TP T+
Sbjct:    7 LRSALALVTGGAGSGIGRAISVRLAAEGAAVAACDLDGAAAQDTVRLLGSPGSEDGAPRGKHAAFQADVSQGPAARRLLEEVQACFSRPPSVVVSCAGITRDEFLLHMSEEDWDRVIAVNLKGTFLVTQAAAQALVSSGGRGSIINISSIIGKVG-NIGQTNYASSKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQ 207          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHB8_CANFA (Estradiol 17-beta-dehydrogenase 8 OS=Canis familiaris GN=HSD17B8 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 64/201 (31.84%), Postives = 97/201 (48.26%), Query Frame = 1
Query:  121 LQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKV-------TGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGA-ASIVLMSSALGIVSANVG-TVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            L+   ALVTG   G+G AV   L+  GATV  C        E +  L  +G +        T    DVS     + L+  V + F+   ++ V+  G +  +  L  + +D+  V++ N +  F + Q A   L +SG   SI+ +SS +G V  NVG T Y+A+K  +  L +  A E  +  IR NSV P +I TP T+
Sbjct:    7 LRSALALVTGAGSGIGRAVSVRLAKEGATVAACDLDRAAACETVWLLGGQGSEKVAPGGAHTAFQADVSEAGAVRRLLEQVQACFSRPPSVVVSCAGLTRDEFLLRMSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVG-NVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQ 206          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: DHB14_BOVIN (17-beta-hydroxysteroid dehydrogenase 14 OS=Bos taurus GN=HSD17B14 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 58/194 (29.90%), Postives = 91/194 (46.91%), Query Frame = 1
Query:  127 GMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGLKVTGSV---CDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKP-TLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVGTVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRTPFTE 696
            G   +VTGG +G+G  +V      GA V  C + E         L        G+V   CDV+     +TL++     F G+L+  VNN G         E +A+ F  ++  N    + L +LA P LR S   +++ +SS +G +  +    Y ATKGA+  + K LA + ++  +R N ++P  I TP  E
Sbjct:    9 GKVVIVTGGGRGIGAGIVRAFVESGAQVVICDKDEARGRAVERELP-------GTVFLLCDVTREEDVRTLVSETIRRF-GRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKLALPHLRKS-RGNVINISSLVGAIGQSQAVPYVATKGAVTAMTKALALDESQYGVRVNCISPGNIWTPLWE 193          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: CMTB_PSEPU (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida GN=cmtB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 1
Query:  106 QNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGL-KVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVG----TVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            +N   L+G  A+VTGG  G+GL +VE L  LGA V      E+ L+     L  K    +     D+S     Q L       F G + I VN  G  V++P LE+  E     +  N  +A    ++  P + A     I+     +G  S   G      Y+A KG M+ L   LA E+A+  +  N+VAP  + T
Sbjct:    6 RNALPLEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLLCERLAAKHADAIAVHAADLSEEQGAQGLHRAAVERF-GSVQILVNCAGGGVIRPFLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRII----NIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNT 198          
BLAST of FC930789 vs. ExPASy Swiss-Prot
Match: CMTB_PSEP1 (2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=cmtB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.355e-13
Identity = 60/198 (30.30%), Postives = 87/198 (43.94%), Query Frame = 1
Query:  106 QNRWSLQGMTALVTGGTKGLGLAVVEELSMLGATVHTCSRTETELNECIHHLQMKGL-KVTGSVCDVSSRPQRQTLINTVSSLFNGKLNIFVNNVGTSVLKPTLEYNAEDFSLVMSTNFESAFHLCQLAHPLLRASGAASIVLMSSALGIVSANVG----TVYSATKGAMNQLAKNLACEWAKDNIRTNSVAPWYIRT 684
            +N   L+G  A+VTGG  G+GL +VE L  LGA V      E+ L+     L  K    +     D+S     Q L       F G + I VN  G  V++P LE+  E     +  N  +A    ++  P + A     I+     +G  S   G      Y+A KG M+ L   LA E+A+  +  N+VAP  + T
Sbjct:    6 RNALPLEGQVAVVTGGAHGIGLGIVERLLGLGARVTASDIDESGLSLLCERLAAKHADAIAVHAADLSEEQGAQGLHRAAVERF-GSVQILVNCAGGGVIRPFLEHTPETLKATIDRNLWTALWCSRVFLPDMLARQYGRII----NIGADSVRNGLPDHAAYNAAKGGMHGLTTGLAREFARQGVTVNTVAPCAVNT 198          
The following BLAST results are available for this feature:
BLAST of FC930789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
DR4L2_HUMAN1.381e-1327.72Dehydrogenase/reductase SDR family member 4-like 2... [more]
DCXR_HUMAN1.381e-1330.53L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
TS2_MAIZE1.803e-1328.87Sex determination protein tasselseed-2 OS=Zea mays... [more]
DH12A_XENLA1.803e-1328.42Estradiol 17-beta-dehydrogenase 12-A OS=Xenopus la... [more]
PECR_CAVPO2.355e-1328.27Peroxisomal trans-2-enoyl-CoA reductase OS=Cavia p... [more]
DHB8_MOUSE2.355e-1330.20Estradiol 17-beta-dehydrogenase 8 OS=Mus musculus ... [more]
DHB8_CANFA2.355e-1331.84Estradiol 17-beta-dehydrogenase 8 OS=Canis familia... [more]
DHB14_BOVIN2.355e-1329.9017-beta-hydroxysteroid dehydrogenase 14 OS=Bos tau... [more]
CMTB_PSEPU2.355e-1330.302,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]
CMTB_PSEP12.355e-1330.302,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase O... [more]

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Properties
Property NameValue
Genbank descriptionC34109A10EF PostHarvP1 Citrus clementina cDNA clone C34109A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930789 ID=FC930789; Name=FC930789; organism=Citrus clementina; type=EST; length=696bp
GAAGCAAACTAAGGCAATATAATAGCGGCCAGCAATACTAGAAGAGGAAG
AGACAGAGCAGAGATCAGAATGGCTCAGCCTCAGCAGACAGAGAGCCATA
GCAGGCAAAACAGATGGAGTCTTCAGGGCATGACAGCTCTTGTTACTGGC
GGCACCAAAGGACTCGGGCTTGCTGTTGTAGAGGAACTGTCAATGCTAGG
CGCCACTGTGCATACATGCTCCAGGACTGAAACAGAGCTTAATGAATGTA
TACATCACCTGCAGATGAAAGGTTTGAAAGTCACCGGTTCAGTCTGTGAT
GTATCGTCTCGACCTCAAAGACAGACGCTAATCAACACAGTCTCCTCTCT
GTTTAATGGCAAACTTAACATCTTTGTAAACAATGTTGGAACAAGTGTAC
TAAAGCCAACTCTCGAGTACAATGCTGAAGATTTTTCATTAGTAATGTCT
ACAAATTTCGAGTCTGCCTTCCACTTATGTCAACTTGCACATCCTCTGTT
GAGAGCTTCTGGGGCAGCAAGCATTGTTCTCATGTCTTCAGCACTAGGCA
TTGTATCAGCAAACGTTGGAACCGTCTATTCAGCTACTAAAGGAGCAATG
AATCAACTTGCAAAAAATTTGGCATGTGAGTGGGCAAAAGACAACATAAG
GACCAATTCTGTCGCTCCTTGGTACATCAGAACTCCCTTTACTGAA
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