FC930792

Overview
NameFC930792
Unique NameFC930792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_XENTR (Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_RANLE (Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_MOUSE (Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_HUMAN (Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_CHICK (Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTG_BOVIN (Actin, cytoplasmic 2 OS=Bos taurus GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
[Close]
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTB1_DANRE (Actin, cytoplasmic 1 OS=Danio rerio GN=actba PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.172e-96
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 2 
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYEGYALPHAILRLDLAGRD
Sbjct:    3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRD 184
The following BLAST results are available for this feature:
BLAST of FC930792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ACTG_XENTR1.172e-9693.41Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg... [more]
ACTG_XENLA1.172e-9693.41Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE... [more]
ACTG_TRIVU1.172e-9693.41Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A... [more]
ACTG_RAT1.172e-9693.41Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1... [more]
ACTG_RANLE1.172e-9693.41Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=... [more]
ACTG_MOUSE1.172e-9693.41Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1... [more]
ACTG_HUMAN1.172e-9693.41Actin, cytoplasmic 2 OS=Homo sapiens GN=ACTG1 PE=1... [more]
ACTG_CHICK1.172e-9693.41Actin, cytoplasmic 2 OS=Gallus gallus GN=ACTG1 PE=... [more]
ACTG_BOVIN1.172e-9693.41Actin, cytoplasmic 2 OS=Bos taurus GN=ACTG1 PE=1 S... [more]
ACTB1_DANRE1.172e-9693.41Actin, cytoplasmic 1 OS=Danio rerio GN=actba PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34109B01EF PostHarvP1 Citrus clementina cDNA clone C34109B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930792 ID=FC930792; Name=FC930792; organism=Citrus clementina; type=EST; length=663bp
GAGTGCTTCTCCGCTTCCGCTAGCTGAAGTTAATCTTTTACTTGCGTTCC
ACAGATTAGAAGATTAAACGCTTTTCCTTTGCTTAATCAAAGAATCATAA
AAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAAC
TGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCAAGGGCAGTTT
TCCCTAGTATTGTTGGCAGACCTCGTCACACAGGCGTAATGGTTGGGATG
GGTCAAAAGGATGCTTACGTAGGTGATGAAGCCCAATCAAAAAGGGGTAT
CCTAACTTTGAAGTACCCAATTGAGCATGGTATAGTCAGCAATTGGGATG
ACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCC
CCTGAGGAACACCCTGTACTTCTGACTGAAGCACCACTCAACCCTAAAGC
CAACAGAGAGAAAATGACCCAGATCATGTTTGAAACCTTCAATGTGCCTG
CTATGTATGTTGCAATCCAGGCCGTTCTTTCCCTTTATGCCAGTGGTCGT
ACAACAGGTATTGTGTTGGATTCTGGTGATGGTGTGAGCCACACAGTACC
GATTTATGAAGGCTATGCCCTCCCTCATGCCATCCTTCGGTTGGACCTTG
CTGGTCGTGATCT
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