FC930792

Overview
NameFC930792
Unique NameFC930792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTT1_MOUSE (Actin-related protein T1 OS=Mus musculus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.994e-47
Identity = 95/181 (52.49%), Postives = 121/181 (66.85%), Query Frame = 2
Query:  119 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            D   ++ DNG+G+ K G +G+  PR V  S+VG P+         +K  +VG+EAQ     L L YPIE G+V+ WDDMEK+W   F  EL V P E PV +TE  LNP+  REK T+IMFE FNVPA+Y+   AV +L AS   TG+VLDSGDGV+ TVP+YEGY+LPHAI +L +AGRD
Sbjct:    8 DNPAVIFDNGSGLCKVGISGEIEPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPQETREKTTEIMFEKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPVYEGYSLPHAITKLYVAGRD 188          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARPM1_HUMAN (Actin-related protein M1 OS=Homo sapiens GN=ARPM1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.112e-46
Identity = 87/178 (48.88%), Postives = 128/178 (71.91%), Query Frame = 2
Query:  128 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            P+V DNG+GM+KAG AG   P+ ++P+I+GR +        G  +  VGD+AQ  R  L + YP+E G++++W+DME +W H +   L++ P + PVL+TE  LNP ANR+++T++ FE   VPA Y++IQAVL+L+A+G TTG+VL+SG GV+ +VPI+EGY LPH + +LDLAG D
Sbjct:    7 PVVIDNGSGMIKAGVAGCREPQFIYPNIIGRAKGQS-RAAQGGLELCVGDQAQDWRSSLFISYPVERGLITSWEDMEIMWKHIYDYNLKLKPCDGPVLITEPALNPLANRQQITEMFFEHLGVPAFYMSIQAVLALFAAGFTTGLVLNSGAGVTQSVPIFEGYCLPHGVQQLDLAGLD 183          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTT1_RAT (Actin-related protein T1 OS=Rattus norvegicus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.898e-46
Identity = 95/181 (52.49%), Postives = 120/181 (66.30%), Query Frame = 2
Query:  119 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            D   ++ DNG+G+ K G +G+  PR V  S+VG P+         +K  +VG+EAQ     L L YPIE G+V+ WDDMEK+W   F  EL V P E PV +TE  LNP+  REK T+IMFE FNVPA+Y+   AV +L AS   TG+VLDSGDGV+ TVPIYEGY+LP AI +L +AGRD
Sbjct:    8 DNPAVIFDNGSGLCKVGISGEIVPRHVINSVVGHPKFNIPSARSNRKRYFVGEEAQCMYDGLYLHYPIERGLVTRWDDMEKLWKDLFEWELGVKPNEQPVFMTEPSLNPRETREKTTEIMFEKFNVPALYLCNHAVGALCASACITGLVLDSGDGVTCTVPIYEGYSLPRAITKLYVAGRD 188          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP2_YEAST (Actin-related protein 2 OS=Saccharomyces cerevisiae GN=ARP2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.478e-46
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = 2
Query:  128 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRP---RHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            P+V D GTG VK G AG++ P   FPSIVGRP         V    KD  +GDEA   R  L + YP+E+GI+ NW DME +W + F+ ++++    +  +LLTE P+NP  NREKM ++MFE ++   +YVAIQAVL+LYA G ++G+V+DSGDGV+H VP+YE   L H   RLD+AGRD
Sbjct:    6 PIVLDQGTGFVKIGRAGENFPDYTFPSIVGRPILRAEERASVATPLKDIMIGDEASEVRSYLQISYPMENGIIKNWTDMELLWDYAFFEQMKLPSTSNGKILLTEPPMNPLKNREKMCEVMFEKYDFGGVYVAIQAVLALYAQGLSSGVVVDSGDGVTHIVPVYESVVLSHLTRRLDVAGRD 187          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.320e-44
Identity = 88/181 (48.62%), Postives = 121/181 (66.85%), Query Frame = 2
Query:  119 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            D+  ++ DNG+G+ KAG +G+  PR V  S++G  +       + Q   +VG EA  K   L L YPI+ G+V+ WDDMEK+W H F  EL V P + PVL+TE  LNP+  REK+ ++MFE F+VP  Y++  AV +LYAS   TG+V+DSGDGV+  VPI+EGY+LPHA+ +L  AGRD
Sbjct:    8 DVPAVIFDNGSGLCKAGVSGEIGPRHVINSVLGHRKFNMPSARLNQY--FVGQEALYKFDALHLHYPIKRGLVTGWDDMEKLWKHLFEWELGVKPSQQPVLMTEPSLNPREIREKLAEMMFENFSVPGFYLSNHAVAALYASACVTGLVVDSGDGVTCAVPIFEGYSLPHAVTKLYTAGRD 186          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACT_CHERU (Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.151e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 2
Query:  359 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 613
            KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG
Sbjct:    1 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 85          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 82/179 (45.81%), Postives = 126/179 (70.39%), Query Frame = 2
Query:  128 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            P+V DNG+GM+KAG AG   P+ V+P+I+GR + HT       +++  VGD+AQ +R  L++ YP+E G++S+W DME +W H +   L +   + PVL+TE  LNP A+R+ ++++ FE   VPA Y++ QAVL+L+A+G TTG+VL+SG G++  VPI+EGY L H + +L++AG D
Sbjct:    7 PVVIDNGSGMIKAGLAGTREPQFVYPNILGRSKGHTAD----SRQELCVGDQAQERRSFLSISYPVERGLISSWGDMEIMWKHIYDYNLNLNASDGPVLVTEPALNPLADRQHISEVFFENLGVPAFYMSAQAVLALFAAGFTTGLVLNSGAGITQCVPIFEGYCLSHGVKQLNVAGSD 181          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7A_MACFA (Actin-like protein 7A OS=Macaca fascicularis GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 82/182 (45.05%), Postives = 117/182 (64.29%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E  + +V D GTG  K GFAG   P     ++VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FE FN PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VPIYEGY LP    RLD AG D
Sbjct:   67 EVTKAVVVDLGTGYCKCGFAGLPRPTHKISTMVGKPYMETAKTGDNRKETFVGQELNNTNVHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFEAFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSD 248          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7A_HUMAN (Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.317e-42
Identity = 82/182 (45.05%), Postives = 116/182 (63.74%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FE FN PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VPIYEGY LP    RLD AG D
Sbjct:   67 EVTKAVVVDLGTGYCKCGFAGLPRPTHKISTTVGKPYMETAKTGDNRKETFVGQELNNTNVHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFEAFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSD 248          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7A_MOUSE (Actin-like protein 7A OS=Mus musculus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.250e-42
Identity = 83/182 (45.60%), Postives = 117/182 (64.29%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FETFN PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VPIYEGY LP    RLD AG D
Sbjct:   72 EVTKAVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGHELFNPDIHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSD 253          
The following BLAST results are available for this feature:
BLAST of FC930792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ACTT1_MOUSE4.994e-4752.49Actin-related protein T1 OS=Mus musculus GN=Actrt1... [more]
ARPM1_HUMAN1.112e-4648.88Actin-related protein M1 OS=Homo sapiens GN=ARPM1 ... [more]
ACTT1_RAT1.898e-4652.49Actin-related protein T1 OS=Rattus norvegicus GN=A... [more]
ARP2_YEAST2.478e-4649.45Actin-related protein 2 OS=Saccharomyces cerevisia... [more]
ACTT1_MACFA2.320e-4448.62Actin-related protein T1 OS=Macaca fascicularis GN... [more]
ACT_CHERU1.151e-43100.00Actin (Fragment) OS=Chenopodium rubrum PE=3 SV=1[more]
ARPM1_MOUSE1.504e-4345.81Actin-related protein M1 homolog OS=Mus musculus G... [more]
ACL7A_MACFA3.703e-4245.05Actin-like protein 7A OS=Macaca fascicularis GN=AC... [more]
ACL7A_HUMAN6.317e-4245.05Actin-like protein 7A OS=Homo sapiens GN=ACTL7A PE... [more]
ACL7A_MOUSE8.250e-4245.60Actin-like protein 7A OS=Mus musculus GN=Actl7a PE... [more]

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Properties
Property NameValue
Genbank descriptionC34109B01EF PostHarvP1 Citrus clementina cDNA clone C34109B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930792 ID=FC930792; Name=FC930792; organism=Citrus clementina; type=EST; length=663bp
GAGTGCTTCTCCGCTTCCGCTAGCTGAAGTTAATCTTTTACTTGCGTTCC
ACAGATTAGAAGATTAAACGCTTTTCCTTTGCTTAATCAAAGAATCATAA
AAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAAC
TGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCAAGGGCAGTTT
TCCCTAGTATTGTTGGCAGACCTCGTCACACAGGCGTAATGGTTGGGATG
GGTCAAAAGGATGCTTACGTAGGTGATGAAGCCCAATCAAAAAGGGGTAT
CCTAACTTTGAAGTACCCAATTGAGCATGGTATAGTCAGCAATTGGGATG
ACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCC
CCTGAGGAACACCCTGTACTTCTGACTGAAGCACCACTCAACCCTAAAGC
CAACAGAGAGAAAATGACCCAGATCATGTTTGAAACCTTCAATGTGCCTG
CTATGTATGTTGCAATCCAGGCCGTTCTTTCCCTTTATGCCAGTGGTCGT
ACAACAGGTATTGTGTTGGATTCTGGTGATGGTGTGAGCCACACAGTACC
GATTTATGAAGGCTATGCCCTCCCTCATGCCATCCTTCGGTTGGACCTTG
CTGGTCGTGATCT
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