FC930792

Overview
NameFC930792
Unique NameFC930792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7A_RAT (Actin-like protein 7A OS=Rattus norvegicus GN=Actl7a PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 83/182 (45.60%), Postives = 117/182 (64.29%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F  E+++APEEH VL+++ PL+P  NREK  +++FETFN PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VPIYEGY LP    RLD AG D
Sbjct:   72 EVTKAVVVDLGTGFCKCGFAGLPKPTHKISTTVGKPYMETAKTGDNRKETFVGRELFNPDIHLKLVNPLRHGIIVDWDTVQDIWEYLFRQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFNTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSD 253          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.407e-41
Identity = 83/187 (44.39%), Postives = 118/187 (63.10%), Query Frame = 2
Query:  101 KMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            K    E  + +V D GTG  K GFAG   P     + VG+P       G  +K+ +VG E  +    L L  P+ HGI+ +WD ++ IW + F+ E+++APEEH VL+++ PL+P  NREK  +++FETF  PAM++A Q+ LS+Y+ GRT+G+V++ G GVS+ VPIYEGY LP    RLD AG D
Sbjct:   65 KKPKLELTKAVVVDLGTGYCKCGFAGLPKPTHRISTTVGKPYMETAKTGDNRKETFVGHELINPEVRLKLINPLRHGIIVDWDTVQDIWEYLFHQEMKIAPEEHAVLVSDPPLSPHTNREKYAEMLFETFKTPAMHIAYQSRLSMYSYGRTSGLVVEVGHGVSYVVPIYEGYPLPSITGRLDYAGSD 251          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTL9_BOVIN (Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.094e-41
Identity = 83/175 (47.43%), Postives = 113/175 (64.57%), Query Frame = 2
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            +V D GTG  K GFAG   P     +IVG         G    + ++G EA  KR  LTL  P+  GIV +WD  E IW H   ++LRVA  +HP+L ++ P +P  NREK+ ++ FE+ + PAMYVA Q+VLS+YA GR +G+V+D+G GV++TVP+++GY LPHA  RLDLAG
Sbjct:   52 VVIDMGTGTCKVGFAGQARPTYTVATIVGCQPQKPATSGQPVMETFIG-EAARKRPELTLVQPVHSGIVVDWDAAELIWRHMLEHDLRVATRDHPLLFSDPPFSPSTNREKLVEVAFESLSSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLPHATQRLDLAG 225          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP3_DICDI (Actin-related protein 3 OS=Dictyostelium discoideum GN=arpC PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 84/199 (42.21%), Postives = 115/199 (57.79%), Query Frame = 2
Query:  104 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQK------DAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            M  A  +  +V DNGTG  K G+AG++ P  + P+ +      G      QK      D ++GDEA +      +  P++HG + NW  ME+ W H  +  LR  PE+H  LLTE PLN   NRE   +IMFETFNVP +Y+A+QAVL+L AS  +       TG V+DSGDGV+H +PI EGY +  +I  + +AGRD
Sbjct:    1 MNPASGLPAVVIDNGTGYTKMGYAGNNDPSFIIPTTIATQSSKGKQTAASQKKGVEDLDFFIGDEAIANSKTYDMTNPVKHGQIENWTHMEQYWEHCVFKYLRCEPEDHYFLLTEPPLNAPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSKNAEKTLTGTVIDSGDGVTHVIPISEGYVIGSSIKHIPIAGRD 199          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTL9_RAT (Actin-like protein 9 OS=Rattus norvegicus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 78/175 (44.57%), Postives = 118/175 (67.43%), Query Frame = 2
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            +V D GTG+ K GFAG   P  +  +IVG        +   + + ++G+ A + R  LTL +P+ +GIV +W+  E IW H   N+LR+  ++HP+L T+ P NP +NREK+ ++ FE+ + PA+YVA Q+VLS+YA+GR  G+V+D+G GVS+TVP+++GY LP  I R+DLAG
Sbjct:   47 VVIDMGTGICKMGFAGQTRPTYIVRNIVGCQPKRRTTMEQPKMEMFIGEAAHA-RPELTLMHPVRNGIVVDWEAAEFIWRHILENDLRLDTQDHPLLFTDPPFNPASNREKLVEVAFESLHSPAIYVASQSVLSVYANGRVNGLVVDTGHGVSYTVPVFQGYNLPSGIQRMDLAG 220          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP3_CAEEL (Actin-related protein 3 OS=Caenorhabditis elegans GN=arx-1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.247e-39
Identity = 86/204 (42.16%), Postives = 116/204 (56.86%), Query Frame = 2
Query:  113 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            A  +   V DNGTG  K G+AG+  P+ + PS +                   V  G+   D ++GDEA S      T+KYPI HGIV +WD ME+ W    +  LR  PE+H  LLTE PLN   NRE   +IMFE+FNVP +Y+A+QAVL+L AS  +        TG+V+DSGDGV+H +P+ +GY +   I  + +AGRD
Sbjct:    3 AHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGIDDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGLVIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRD 206          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACTL9_MOUSE (Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.934e-39
Identity = 78/175 (44.57%), Postives = 114/175 (65.14%), Query Frame = 2
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            +V D GTG  K GFAG   P     +I+G            + + ++G+ A+S+  +  +K PI +GIV +W+  E IW H   ++L+VA  EHP+L ++ P +P  NREK+ ++ FE+ + PA+YVA Q+VLS+YA GR  G+V+D+G GVS+TVP+ +GY LPHAI RLDLAG
Sbjct:   51 VVIDMGTGTCKVGFAGQSQPTYTVATILGCQPKKQATKDQSELETFIGEAARSRPELRLVK-PIRNGIVVDWEAAELIWRHILEHDLQVATHEHPLLFSDPPFSPATNREKLVEVAFESLHSPALYVASQSVLSVYAHGRVNGLVVDTGHGVSYTVPVVQGYNLPHAIQRLDLAG 224          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP3_SCHPO (Actin-related protein 3 OS=Schizosaccharomyces pombe GN=act2 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.832e-39
Identity = 88/210 (41.90%), Postives = 119/210 (56.67%), Query Frame = 2
Query:  128 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------MGQK--------------DAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            P++ DNGTG  K G+AG+DAP  VFP+++   R  G   G         M  K              D ++G++A  K     +L YPI HG + NWD ME+ W  + +  LR  PE+H  LLTE PLNP  NRE   +IMFE+FN   +Y+A+QAVL+L AS  +        TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD
Sbjct:    7 PIIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRD 215          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7B_MOUSE (Actin-like protein 7B OS=Mus musculus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.537e-39
Identity = 79/181 (43.65%), Postives = 116/181 (64.09%), Query Frame = 2
Query:  122 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            I+ LV D G+   K G+AG+  P     S VG+ R       G   K+ YVG E  +    L L  P++HG+V +WD ++ IW + F+  +++ PEEH VL+++ PL+P +NREK  +++FETF +PAM+V  QA+LS+Y+ G+T+G+V++SG GVSH VPI EG  LP    R+D AG D
Sbjct:   51 IKALVIDLGSQYCKCGYAGEPRPTYFISSTVGKRRPEMAADAGDNFKETYVGHELLNMEASLKLVNPLKHGVVVDWDCIQNIWEYIFHTAMKIMPEEHAVLVSDPPLSPTSNREKYAELLFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVPISEGDLLPGLPSRVDYAGCD 231          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ACL7B_RAT (Actin-like protein 7B OS=Rattus norvegicus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.537e-39
Identity = 80/181 (44.20%), Postives = 115/181 (63.54%), Query Frame = 2
Query:  122 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG-RPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            I+ LV D G+   K G+AG+  P     S VG R        G   K+ YVG E  +    L L  P++HG+V +WD ++ IW + F+  +++ PEEH VL+++ PL+P +NREK  ++MFETF +PAM+V  QA+LS+Y+ G+T+G+V++SG GVSH VPI EG  LP    R+D AG D
Sbjct:   50 IKALVIDLGSQYCKCGYAGEPRPTYFISSTVGKRSAEMAADAGDTFKETYVGHELLNMEASLKLVNPLKHGVVVDWDCIQNIWEYIFHTAMKILPEEHAVLVSDPPLSPTSNREKYAELMFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVVPISEGDLLPGLPSRVDYAGCD 230          
The following BLAST results are available for this feature:
BLAST of FC930792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ACL7A_RAT1.077e-4145.60Actin-like protein 7A OS=Rattus norvegicus GN=Actl... [more]
ACL7A_BOVIN1.407e-4144.39Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2... [more]
ACTL9_BOVIN4.094e-4147.43Actin-like protein 9 OS=Bos taurus GN=ACTL9 PE=2 S... [more]
ARP3_DICDI3.466e-4042.21Actin-related protein 3 OS=Dictyostelium discoideu... [more]
ACTL9_RAT3.466e-4044.57Actin-like protein 9 OS=Rattus norvegicus GN=Actl9... [more]
ARP3_CAEEL2.247e-3942.16Actin-related protein 3 OS=Caenorhabditis elegans ... [more]
ACTL9_MOUSE2.934e-3944.57Actin-like protein 9 OS=Mus musculus GN=Actl9 PE=2... [more]
ARP3_SCHPO3.832e-3941.90Actin-related protein 3 OS=Schizosaccharomyces pom... [more]
ACL7B_MOUSE6.537e-3943.65Actin-like protein 7B OS=Mus musculus GN=Actl7b PE... [more]
ACL7B_RAT8.537e-3944.20Actin-like protein 7B OS=Rattus norvegicus GN=Actl... [more]

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Properties
Property NameValue
Genbank descriptionC34109B01EF PostHarvP1 Citrus clementina cDNA clone C34109B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930792 ID=FC930792; Name=FC930792; organism=Citrus clementina; type=EST; length=663bp
GAGTGCTTCTCCGCTTCCGCTAGCTGAAGTTAATCTTTTACTTGCGTTCC
ACAGATTAGAAGATTAAACGCTTTTCCTTTGCTTAATCAAAGAATCATAA
AAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAAC
TGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCAAGGGCAGTTT
TCCCTAGTATTGTTGGCAGACCTCGTCACACAGGCGTAATGGTTGGGATG
GGTCAAAAGGATGCTTACGTAGGTGATGAAGCCCAATCAAAAAGGGGTAT
CCTAACTTTGAAGTACCCAATTGAGCATGGTATAGTCAGCAATTGGGATG
ACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCC
CCTGAGGAACACCCTGTACTTCTGACTGAAGCACCACTCAACCCTAAAGC
CAACAGAGAGAAAATGACCCAGATCATGTTTGAAACCTTCAATGTGCCTG
CTATGTATGTTGCAATCCAGGCCGTTCTTTCCCTTTATGCCAGTGGTCGT
ACAACAGGTATTGTGTTGGATTCTGGTGATGGTGTGAGCCACACAGTACC
GATTTATGAAGGCTATGCCCTCCCTCATGCCATCCTTCGGTTGGACCTTG
CTGGTCGTGATCT
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