FC930792

Overview
NameFC930792
Unique NameFC930792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 68/182 (37.36%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  122 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 661
            ++ LV D G+  +KAG A  D +P  + PS + R      MV  G   A   D   +    +TL  PIE G++ +WD ME +  +  Y  L      E  +L T+    PKA RE++ Q+MFETFNV   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R +L G +
Sbjct:    1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR------MVDDGSSSA---DNPTTVFEDVTLD-PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGGTE 172          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 57/186 (30.65%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR---------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 658
            +V DNG G++KAG  G+  P  V P+ + +P  +   +        + DE         ++ PI+ G + N D   +IW H F + L +AP    +LLTEAPL+  + +    +++FE F   ++Y+A  Q+++ LY + R            +V+D G   +H VP+   + L HAI R+DL G+
Sbjct:    5 VVLDNGGGLIKAGQGGERDPTTVIPNCLYKPLSSKKFIHPSPLTT-LSDEIDLTSA--AVRRPIDRGYLINSDLQREIWSHLFTSLLHIAPSSSSLLLTEAPLSIPSVQRTTDELVFEDFGFSSLYIAHPQSLVHLYEASRQPDSILSKTQCSLVVDCGFSFTHAVPVLHNFTLNHAIKRIDLGGK 187          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.514e-19
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 2
Query:  104 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 463
            M   +++  +V D G+   KAG+AG+DAP+AVFPS+VG     G+ +                 G++  Y G +A + +R  + +  P + GIV++WD ++ +W H F N L + P EHP+LL E PLN +  REK
Sbjct:    1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 56/187 (29.95%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 658
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+ R+DL G+
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGK 186          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.870e-18
Identity = 56/187 (29.95%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  131 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI---LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-IQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 658
            +V DNG G++KAGF GD  P AV P+ + +P         G K   V D+ Q++      +TL+ PI+ G + N +   ++W     N L+V P    +LL E   NP A +    +++FE     ++ VA   +++ LY + R          +V+D G   +H  P+ + + L +A+ R+DL G+
Sbjct:    8 VVLDNGGGLLKAGFGGDMNPTAVVPNCMAKPP--------GSKKWLVADQLQAQDVDVTGMTLRRPIDRGYLINQEVQREVWERVIRNLLQVDPNNSSLLLVEPQFNPPALQHATDELVFEELGFKSLCVADAPSLVHLYEASRQPSLFRAQCSLVVDCGFSFTHASPVLQNFTLNYAVRRMDLGGK 186          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP4_ASPFU (Actin-related protein 4 OS=Aspergillus fumigatus GN=arp4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.157e-17
Identity = 59/213 (27.70%), Postives = 97/213 (45.54%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELR--------------------------VAPEE-----HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            ++I  +V D G    +AGFAG+D P++V P+  G+  +        Q+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L                           V  EE      P+L+TE   NP   REK  +I  E +  PA Y+A   VL+ +A+G+ + +V+D G       P+++G  L   +    L G
Sbjct:    9 DEISAIVLDPGFSTTRAGFAGEDTPKSVIPTYYGKYTYE------AQEKLIFGDDIFVTPRPGLSIHNPMGRDGVVEDWDMAEKVWEYSFTSRLTGPKAGNPFQNGLNDVANGELPSEMEGVETEEKPLADSPLLMTECGWNPTKAREKTVEIAMEKWGTPAFYLARNGVLAAFAAGKASALVVDVGASNISVTPVHDGMILKRGVQHSPLGG 215          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 55/213 (25.82%), Postives = 96/213 (45.07%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEA-QSKRGILTLKYPI-EHGIVSNWDDMEKIWHHTFYNELRVAP-------------------------------EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            +++  +V D G    +AGFAG+D P+++ P+  G+          GQ+    GD+   + R  L++  P+   G+V +WD  EK+W ++F + L  A                                 + P+L++E   NP   REK  +I  E +  PA Y+A   VL+ +A+G+ + +V+D G       P+++G  L   +    L G
Sbjct:   15 DEVSAIVLDPGFSTTRAGFAGEDTPKSLVPTYYGKYSFE------GQEKLIFGDDVFVTPRPSLSVGNPMGRDGVVEDWDMAEKLWEYSFTSRLTGAKPSNPLHNGLNDLVEGELPTEMEGVETNEKPLADSPLLMSECSWNPTKAREKTIEIAMEKWGTPAFYLARNGVLASFAAGKASALVVDIGASNISVTPVHDGMVLKRGVQHSPLGG 221          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 58/219 (26.48%), Postives = 98/219 (44.75%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLK-YPIEHGIVSNWDDMEKIWHHTFYNELRVA---------------PE-----------------------EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            +++  LV D G    +AGFAG+D P+++ PS  G       + G   +D + GDE    R    ++ Y  +  +V +WD   +IW +   N L+                 PE                       E+P+L+TEAP N    REK  +I+ E +  PA +++   VL+ +A+G+ T +V+D G   +    I++G  L  +I +  + G
Sbjct:   19 DEVSALVLDPGYCSTRAGFAGEDVPKSILPSFYGH------VTGDNSRDLF-GDECLIPRENYEVRNYMNKDSVVEDWDVAARIWENMLVNRLQPERQTPPSKNGLNDDPRPEGQDGEGDVAMDDAEAESMEKPLGENPLLVTEAPWNTPKAREKAIEIIMENWGCPAFWMSRTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVLKRSIQKSPVGG 230          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 655
            ++I  +V D G+     G++G D P+A+ PS  G+          G+KD    +++    R    +   +++G V +W+  EK W     +ELR       P LLTE   N + NR+K  +++ E+ +  A Y+   A    +A GR T +V+D G  V+   P+ +G  L  + +R  +AG
Sbjct:   12 DEITAVVIDPGSFTTNIGYSGTDCPQAILPSCYGKYTE-------GEKDELFSEQSIGLPRKDYEIHNIVQNGEVVDWEKAEKQWDWAIRSELRFETNSGMPALLTEPIWNSEENRKKSLEVLLESMDFSACYLVPTATAVSFAMGRPTCLVVDIGHDVTSVCPVVDGMTLSKSSMRSYIAG 186          
BLAST of FC930792 vs. ExPASy Swiss-Prot
Match: ARP4_YEAST (Actin-related protein 4 OS=Saccharomyces cerevisiae GN=ARP4 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 51/182 (28.02%), Postives = 84/182 (46.15%), Query Frame = 2
Query:  116 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 658
            +++  +V D G+     G++G D P+++ PS+ G+          G K  +        R    LK  IE+G+V +WD  ++ W     NEL +      P LLTE   N   NR+K  +++ E     A Y+A  +    +A+GR   +V+D G       PI +G  L  +  R  +AG+
Sbjct:   12 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGK-----YTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPIVDGMTLSKSTRRNFIAGK 188          
The following BLAST results are available for this feature:
BLAST of FC930792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 471
Match NameE-valueIdentityDescription
ARP7_ARATH8.876e-2037.36Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]
ARP6_ARATH4.405e-1930.65Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP4A_ARATH7.514e-1936.03Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ARP6_ORYSJ4.870e-1829.95Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI4.870e-1829.95Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP4_ASPFU3.157e-1727.70Actin-related protein 4 OS=Aspergillus fumigatus G... [more]
ARP4_EMENI1.567e-1625.82Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ARP4_GIBZE5.954e-1626.48Actin-related protein 4 OS=Gibberella zeae GN=ARP4... [more]
ARP4_ASHGO1.326e-1528.57Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP4_YEAST2.955e-1528.02Actin-related protein 4 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC34109B01EF PostHarvP1 Citrus clementina cDNA clone C34109B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930792 ID=FC930792; Name=FC930792; organism=Citrus clementina; type=EST; length=663bp
GAGTGCTTCTCCGCTTCCGCTAGCTGAAGTTAATCTTTTACTTGCGTTCC
ACAGATTAGAAGATTAAACGCTTTTCCTTTGCTTAATCAAAGAATCATAA
AAGATGGCTGATGCTGAGGATATTCAACCCCTTGTCTGTGACAATGGAAC
TGGAATGGTCAAGGCTGGTTTTGCTGGTGATGATGCTCCAAGGGCAGTTT
TCCCTAGTATTGTTGGCAGACCTCGTCACACAGGCGTAATGGTTGGGATG
GGTCAAAAGGATGCTTACGTAGGTGATGAAGCCCAATCAAAAAGGGGTAT
CCTAACTTTGAAGTACCCAATTGAGCATGGTATAGTCAGCAATTGGGATG
ACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTGGCC
CCTGAGGAACACCCTGTACTTCTGACTGAAGCACCACTCAACCCTAAAGC
CAACAGAGAGAAAATGACCCAGATCATGTTTGAAACCTTCAATGTGCCTG
CTATGTATGTTGCAATCCAGGCCGTTCTTTCCCTTTATGCCAGTGGTCGT
ACAACAGGTATTGTGTTGGATTCTGGTGATGGTGTGAGCCACACAGTACC
GATTTATGAAGGCTATGCCCTCCCTCATGCCATCCTTCGGTTGGACCTTG
CTGGTCGTGATCT
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