FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930796_ssr97 microsatellite FC930796_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig584 contig Ccv1_Contig584:9..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_SYNY3 (Ribose-phosphate pyrophosphokinase OS=Synechocystis sp. (strain PCC 6803) GN=prs PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.898e-23
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 1
Query:  457 NNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            NNR++LFSG++NP+LSQE+A Y+G+++G +  KRFADGE+Y+Q+QES+RG DVYL+QP C P N+NLMELLI
Sbjct:   22 NNRLRLFSGSSNPSLSQEVARYLGMDIGPMLRKRFADGELYIQIQESIRGGDVYLIQPCCHPVNDNLMELLI 93          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_ANASP (Ribose-phosphate pyrophosphokinase OS=Anabaena sp. (strain PCC 7120) GN=prs PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 48/74 (64.86%), Postives = 64/74 (86.49%), Query Frame = 1
Query:  451 TTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            T N+R++LFSG++N  LSQE+A Y+G++LG +  KRFADGE+YVQ+QES+RGCDVYL+QP C P N++LMELLI
Sbjct:   17 TENHRLRLFSGSSNVQLSQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPCCQPVNDHLMELLI 90          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PROMP (Ribose-phosphate pyrophosphokinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=prs PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.589e-22
Identity = 47/90 (52.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query:  403 LPKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            +  F+     E+     TN+R++L SGT+NP L++EIA Y+G+E   +  KRFADGE+YVQ+Q+S+RGCDV+L+QPTC P N++LMEL+I
Sbjct:    1 MTSFITAVDNEEPTFNLTNSRLRLVSGTSNPKLAEEIASYLGIENVPLVSKRFADGELYVQIQQSIRGCDVFLIQPTCAPVNDSLMELMI 90          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_GLOVI (Ribose-phosphate pyrophosphokinase OS=Gloeobacter violaceus GN=prs PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.377e-21
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1
Query:  406 PKFLETARMEKTVNRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            P  L      + V    + R++LFSG+ANP L+Q +A Y+G+  G +  K FADGE+YVQ+QES+RGCDVYLVQPTC P N++LMELLI
Sbjct:    4 PDLLPRRSTVQPVRLMGDERLRLFSGSANPELAQLVARYLGLAPGPLVRKSFADGELYVQIQESIRGCDVYLVQPTCSPVNDSLMELLI 92          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PROMA (Ribose-phosphate pyrophosphokinase OS=Prochlorococcus marinus GN=prs PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.088e-20
Identity = 46/85 (54.12%), Postives = 67/85 (78.82%), Query Frame = 1
Query:  421 TARMEKTVNRTTN-NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            TA   + +  + N +R+KL SGT+NP L++EI+ Y+G+E   +  KRFADGE+YVQ+Q+S+RGCDV+L+QPTC P N++LMEL+I
Sbjct:    2 TAATAQNIKSSLNTDRLKLISGTSNPILAKEISSYIGIEDVPVVSKRFADGELYVQIQQSIRGCDVFLIQPTCAPVNDSLMELMI 86          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAAW (Ribose-phosphate pyrophosphokinase OS=Staphylococcus aureus (strain MW2) GN=prs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N AL+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAAS (Ribose-phosphate pyrophosphokinase OS=Staphylococcus aureus (strain MSSA476) GN=prs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N AL+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAAR (Ribose-phosphate pyrophosphokinase OS=Staphylococcus aureus (strain MRSA252) GN=prs PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N AL+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAAN (Ribose-phosphate pyrophosphokinase OS=Staphylococcus aureus (strain N315) GN=prs PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N AL+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLI 79          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_STAAM (Ribose-phosphate pyrophosphokinase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=prs PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  445 NRTTNNRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   N+ +K+FS   N AL+QE+A  +G+ELGK ++KRF+DGEI + ++ES+RGCDV+++QPT  P N +LMELLI
Sbjct:    4 NEYKNSSLKIFSLKGNEALAQEVADQVGIELGKCSVKRFSDGEIQINIEESIRGCDVFIIQPTSYPVNLHLMELLI 79          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
KPRS_SYNY38.898e-2365.28Ribose-phosphate pyrophosphokinase OS=Synechocysti... [more]
KPRS_ANASP1.162e-2264.86Ribose-phosphate pyrophosphokinase OS=Anabaena sp.... [more]
KPRS_PROMP2.589e-2252.22Ribose-phosphate pyrophosphokinase OS=Prochlorococ... [more]
KPRS_GLOVI6.377e-2155.06Ribose-phosphate pyrophosphokinase OS=Gloeobacter ... [more]
KPRS_PROMA1.088e-2054.12Ribose-phosphate pyrophosphokinase OS=Prochlorococ... [more]
KPRS_STAAW6.599e-1853.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAAS6.599e-1853.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAAR6.599e-1853.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAAN6.599e-1853.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]
KPRS_STAAM6.599e-1853.95Ribose-phosphate pyrophosphokinase OS=Staphylococc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
back to top