FC930796

Overview
NameFC930796
Unique NameFC930796
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_XENLA (Ribose-phosphate pyrophosphokinase 2 OS=Xenopus laevis GN=prps2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ++A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHQDLSQKVAERLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_RAT (Ribose-phosphate pyrophosphokinase 2 OS=Rattus norvegicus GN=Prps2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ +A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_PONAB (Ribose-phosphate pyrophosphokinase 2 OS=Pongo abelii GN=PRPS2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ +A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_MOUSE (Ribose-phosphate pyrophosphokinase 2 OS=Mus musculus GN=Prps2 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ +A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_MACFA (Ribose-phosphate pyrophosphokinase 2 OS=Macaca fascicularis GN=PRPS2 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ +A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_HUMAN (Ribose-phosphate pyrophosphokinase 2 OS=Homo sapiens GN=PRPS2 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ +A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHQDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS1_LACLA (Ribose-phosphate pyrophosphokinase 1 OS=Lactococcus lactis subsp. lactis GN=prs1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 34/71 (47.89%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            + +KLFS ++N  L+Q++A  +G+ELGK+++   +DGE  V + ESVRG  V+++Q T  P N+NLMELLI
Sbjct:    4 SNLKLFSLSSNHELAQKVAKEIGIELGKVSVGAHSDGETVVHIDESVRGDHVFILQSTSDPVNDNLMELLI 74          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: PRPS2_CHICK (Ribose-phosphate pyrophosphokinase 2 OS=Gallus gallus GN=PRPS2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  466 IKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            I LFSG+++  LSQ +A  +G+ELGK+  K+F++ E  V++ ESVRG DVY++Q  C   N+NLMELLI
Sbjct:    4 IVLFSGSSHHDLSQRVADRLGLELGKVVTKKFSNQETSVEIGESVRGEDVYIIQSGCGEINDNLMELLI 72          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS2_LACPL (Ribose-phosphate pyrophosphokinase 2 OS=Lactobacillus plantarum GN=prs2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 30/70 (42.86%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  463 RIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            ++KLF+  +N  L+++IA  +G+ LGK ++KRF+DGEI + ++ES+RG +V+++Q    P N+ ++ELLI
Sbjct:    9 KLKLFALNSNLPLAEKIAQRVGIPLGKSSVKRFSDGEIQINIEESIRGAEVFVIQSISEPVNDTILELLI 78          
BLAST of FC930796 vs. ExPASy Swiss-Prot
Match: KPRS_PORGI (Ribose-phosphate pyrophosphokinase OS=Porphyromonas gingivalis GN=prs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query:  460 NRIKLFSGTANPALSQEIACYMGVELGKINIKRFADGEIYVQLQESVRGCDVYLVQPTCPPGNENLMELLI 672
            N   +FSGT +  L+++I   +G  LG++NI+ FADGE  V  +ES+RG DV+LVQ T  P ++NLMELL+
Sbjct:    5 NNFSVFSGTNSRYLAEKICNSLGCPLGRMNIEHFADGEFAVSYEESIRGRDVFLVQSTF-PSSDNLMELLL 74          
The following BLAST results are available for this feature:
BLAST of FC930796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
PRPS2_XENLA7.066e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Xenopus la... [more]
PRPS2_RAT7.066e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Rattus nor... [more]
PRPS2_PONAB7.066e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Pongo abel... [more]
PRPS2_MOUSE7.066e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Mus muscul... [more]
PRPS2_MACFA7.066e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Macaca fas... [more]
PRPS2_HUMAN7.066e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Homo sapie... [more]
KPRS1_LACLA7.066e-1247.89Ribose-phosphate pyrophosphokinase 1 OS=Lactococcu... [more]
PRPS2_CHICK9.229e-1252.17Ribose-phosphate pyrophosphokinase 2 OS=Gallus gal... [more]
KPRS2_LACPL1.205e-1142.86Ribose-phosphate pyrophosphokinase 2 OS=Lactobacil... [more]
KPRS_PORGI3.507e-1149.30Ribose-phosphate pyrophosphokinase OS=Porphyromona... [more]

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Properties
Property NameValue
Genbank descriptionC34109B05EF PostHarvP1 Citrus clementina cDNA clone C34109B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930796 ID=FC930796; Name=FC930796; organism=Citrus clementina; type=EST; length=674bp
GATGAAAATCCAAAGCGACGAAGCAAAATAGCCAAAGAAGAAGAAAAAGC
AACCGAAGCTCTCTCTGCCTCCTCACCGTCACCACAAAAACAAAAGGAAA
GAAAGAAAGAGAGTGAGTGAGAGAAAGAGAGATCAAAAGGAGAGAGAGCT
GAAACAACACAACAGATAACAATGGCTTCGCTGACGATGCCGCGCCCTTC
ACAATCCACGTCAGCTTCTTGCTCTTCGCCTATCCCCAGTCGCTGTTCTT
TCGGTGACCAAAACCCAACTTTTTCATTCAGTTTCAGGGACTCTCGCTCT
CGGGTTCACGTCTGTAATGCCGCCGCCGTTAGATGTGACATGGCTGAGGC
ATTGAATTTTCCAAATGGGAAGCCTAATATTCCAGTTCTAAACGAACGGA
CGCTGCCCAAATTTTTGGAAACGGCGCGTATGGAGAAAACTGTCAACAGA
ACTACAAATAACAGGATCAAATTGTTCTCTGGCACCGCCAATCCTGCTCT
TTCCCAGGAAATTGCTTGCTACATGGGCGTGGAACTGGGAAAGATCAACA
TAAAGCGATTTGCTGATGGTGAAATTTATGTTCAGCTGCAAGAGAGTGTT
AGAGGATGTGATGTTTATTTGGTGCAGCCCACCTGTCCTCCCGGCAATGA
AAATCTCATGGAGCTTTTGATAAT
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