FC930819

Overview
NameFC930819
Unique NameFC930819
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15220 contig Ccv1_Contig15220:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 9.690e-84
Identity = 154/230 (66.96%), Postives = 179/230 (77.83%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            V L MYN  ESIR FA AS +     KWP+YLSTKNTILK YDG FKD F+ VYE  +K++FEAAG+ YEHRLIDDMVA  LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  I TVESGKMTKDLA++I       + +LN+EEF+DA+AD+L  +
Sbjct:  181 VVLGMYNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKE 406          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 9.690e-84
Identity = 154/230 (66.96%), Postives = 179/230 (77.83%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            V L MYN  ESIR FA AS +     KWP+YLSTKNTILK YDG FKD F+ VYE  +K++FEAAG+ YEHRLIDDMVA  LK EGGYVWACKNYDGDVQSD +AQG+GSLGLMTSVL+  DGKT+EAEAAHGTVTRHYR +Q G  TSTN IASIFAW+RGL HR KLD    ++DF  KLE+  I TVESGKMTKDLA++I       + +LN+EEF+DA+AD+L  +
Sbjct:  181 VVLGMYNFKESIRDFARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLIDDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGTVTRHYRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKE 406          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_SCHPO (Probable isocitrate dehydrogenase [NADP], mitochondrial OS=Schizosaccharomyces pombe GN=idp1 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.819e-83
Identity = 151/230 (65.65%), Postives = 181/230 (78.70%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            VA+SMYNTD+SIR FA +S   A QKK PLYLSTKNTILKKYDGRFKD FQEVYE+++K KFE  G+WY+HRLIDDMVA A+KS GG+VWACKNYDGDV SD +AQ +GSLGLMTSVL+ P+G+T E+EAAHGTV RHY  + KG +TSTNSIASIFAW+RGLAHR +LD N RL+ F   LE AC+  VE G MTKDL L+      +   Y++T EF+DAV  +L ++
Sbjct:  188 VAMSMYNTDDSIRGFAHSSFQMALQKKMPLYLSTKNTILKKYDGRFKDTFQEVYESDYKQKFEELGLWYQHRLIDDMVAQAIKSNGGFVWACKNYDGDVMSDVVAQAYGSLGLMTSVLIHPNGRTFESEAAHGTVQRHYMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDGNERLVKFANALEHACVRCVEKGIMTKDLYLL----SKSPNGYVDTFEFLDAVKSELDSE 413          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDH1_CANTR (Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida tropicalis GN=IDP1 PE=3 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.069e-82
Identity = 155/229 (67.69%), Postives = 178/229 (77.73%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 686
            V L+MYNTDESI  FA AS   A  K  PLY+STKNTILKKYDGRFKDIFQ++YE ++ ++FE  G+WYEHRLIDDMVA  +KS+GG+V A KNYDGDVQSD +AQGFGSLGLMTS L+ PDGK  EAEAAHGTVTRHYR HQ+G ETSTNSIASIFAW+RGLA R KLD    ++DF  KLE A I TVE  + MTKDLAL +   K  R  Y+ T EF+DAVAD L+
Sbjct:  203 VGLAMYNTDESITGFAHASFKMALAKGLPLYMSTKNTILKKYDGRFKDIFQQIYEQDYAAEFEKQGLWYEHRLIDDMVAQMIKSKGGFVMALKNYDGDVQSDIVAQGFGSLGLMTSALMTPDGKAYEAEAAHGTVTRHYRQHQQGKETSTNSIASIFAWTRGLAQRGKLDETPDVVDFASKLEQATIDTVEVDRIMTKDLALAM--GKTDRSAYVTTTEFLDAVADRLK 429          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.446e-81
Identity = 150/230 (65.22%), Postives = 179/230 (77.83%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            VA+ MYN DESIR FA+AS N    + WP+YLSTKNTILK YDGRFKD+FQEV++A +  KF+AAGI YEHRLIDDMVA ALK  G +VWACKNYDGDVQSD +AQGFGSLGLMTSVL+ PDGKT+EAEAAHGTVTRHYR HQ+G  TSTN IASIFAW++GL+ R K D+   ++ F E LE  CI TVE G MTKDLAL+I       + ++ TE+F +A+  +L A+
Sbjct:  176 VAMGMYNLDESIRDFAKASFNYGLNRGWPVYLSTKNTILKAYDGRFKDLFQEVFDAEFADKFKAAGIVYEHRLIDDMVASALKWSGKFVWACKNYDGDVQSDTVAQGFGSLGLMTSVLLSPDGKTVEAEAAHGTVTRHYRQHQQGKATSTNPIASIFAWTQGLSFRGKFDDTPDVVKFAETLEQVCIKTVEGGAMTKDLALLIGPD----QAWMTTEQFFEAIRVNLEAE 401          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.310e-80
Identity = 156/231 (67.53%), Postives = 179/231 (77.49%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            VA++MYNTDESI  FA +S   A  KK  L+LSTKNTILKKYDGRFKDIFQEVYEA +KSKFE  GI YEHRLIDDMVA  +KS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+LV PDGKT E+EAAHGTVTRHYR +QKG ETSTNSIASIFAWSRGL  R +LDN   L  F   LE+A + TV + G MTKDLAL    ++  R  Y+ TEEF+DAV   L+ +
Sbjct:  195 VAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCKFANILESATLNTVQQDGIMTKDLALACGNNE--RSAYVTTEEFLDAVEKRLQKE 423          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHC_YEAST (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces cerevisiae GN=IDP2 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 3.810e-80
Identity = 149/231 (64.50%), Postives = 181/231 (78.35%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            VA+ MYNT +SI  FA+AS   A ++K PLY +TKNTILKKYDG+FKD+F+ +Y  ++K KFE+ GIWYEHRLIDDMVA  LKS+GGY+ A KNYDGDV+SD +AQGFGSLGLMTSVL+ PDGKT E+EAAHGTVTRH+R HQ+G ETSTNSIASIFAW+RG+  R KLDN   ++ F + LE+A + TV E G MTKDLALI+   K  R  Y+ TEEFIDAV   L+ +
Sbjct:  178 VAMMMYNTTDSIEGFAKASFELAIERKLPLYSTTKNTILKKYDGKFKDVFEAMYARSYKEKFESLGIWYEHRLIDDMVAQMLKSKGGYIIAMKNYDGDVESDIVAQGFGSLGLMTSVLITPDGKTFESEAAHGTVTRHFRQHQQGKETSTNSIASIFAWTRGIIQRGKLDNTPDVVKFGQILESATVNTVQEDGIMTKDLALIL--GKSERSAYVTTEEFIDAVESRLKKE 406          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDH2_CANTR (Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis GN=IDP2 PE=1 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 1.770e-77
Identity = 150/228 (65.79%), Postives = 174/228 (76.32%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGK-MTKDLALIIHGSKMTREHYLNTEEFIDAVADDL 683
            VALSMYNTD SI  FAE+S   A ++K  L+ STKNTILKKYDG+FKDIF+ +Y + +K+K +  GIWYEHRLIDDMVA  LKS+GGY+ A KNYDGDVQSD +AQGFGSLGLMTSVLV PDGK  E+EAAHGTVTRHYR HQ+G ETSTNSIASI+AW+RGL  R KLD+   ++ F E+LE A I TV     MTKDLAL     K  R  Y+ TEEFID VA+ L
Sbjct:  180 VALSMYNTDASITDFAESSFQLAIERKLNLFSSTKNTILKKYDGKFKDIFEGLYASKYKTKMDELGIWYEHRLIDDMVAQMLKSKGGYIIAMKNYDGDVQSDIVAQGFGSLGLMTSVLVTPDGKAFESEAAHGTVTRHYRQHQQGKETSTNSIASIYAWTRGLIQRGKLDDTPEVVKFAEELEKAVIETVSKDNIMTKDLALT--QGKTDRSSYVTTEEFIDGVANRL 405          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHP_ASPNG (Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger GN=icdA PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.150e-77
Identity = 147/231 (63.64%), Postives = 173/231 (74.89%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTV-ESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAD 692
            +A + YNTDESIR FA AS   A  K  PLY+STKNTILK+YDGRFKDIFQE+YE+ ++  FEA  +WYEHRLIDDMVA  +KSEGG+V A KNYDGDVQSD +AQGFGSLGLMTS LV P G+  E+EAAHGTVTRHYR HQKG ETSTN IASIFAW+RGL  R KLD    ++ F E+LE ACI  V + G MTKDLAL     +  RE ++ T E++ AV   L+A+
Sbjct:  265 IAQTQYNTDESIRGFAHASFQMALLKGLPLYMSTKNTILKRYDGRFKDIFQEIYESTYQKDFEAKNLWYEHRLIDDMVAQMIKSEGGFVMALKNYDGDVQSDIVAQGFGSLGLMTSTLVTPTGEAFESEAAHGTVTRHYREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDVVTFAEELERACIEVVNDEGIMTKDLALAC--GRKEREAWVTTREYMAAVERRLKAN 493          
BLAST of FC930819 vs. ExPASy Swiss-Prot
Match: IDHH_YEAST (Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae GN=IDP3 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.960e-74
Identity = 138/229 (60.26%), Postives = 175/229 (76.42%), Query Frame = 3
Query:    3 VALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVE-SGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLR 686
            +A++M+NT++SI+ FA+AS   A ++K PL+ +TKNTILK YD +FK IF  +++  +K KF+A  I YEHRLIDDMVA  LKS+GG++ A KNYDGDVQSD +AQGFGSLGLMTS+L+ PDGKT E+EAAHGTVTRH+R HQ+G ETSTNSIASIFAW+R +  R KLDN   ++ F   LE A + TV+  GKMTKDLAL++   K  R  Y+ TEEFID VA  L+
Sbjct:  178 IAMAMFNTNDSIKGFAKASFELALKRKLPLFFTTKNTILKNYDNQFKQIFDNLFDKEYKEKFQALKITYEHRLIDDMVAQMLKSKGGFIIAMKNYDGDVQSDIVAQGFGSLGLMTSILITPDGKTFESEAAHGTVTRHFRKHQRGEETSTNSIASIFAWTRAIIQRGKLDNTDDVIKFGNLLEKATLDTVQVGGKMTKDLALML--GKTNRSSYVTTEEFIDEVAKRLQ 404          
The following BLAST results are available for this feature:
BLAST of FC930819 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDH_MYCTU9.690e-8466.96Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO9.690e-8466.96Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDHP_SCHPO2.819e-8365.65Probable isocitrate dehydrogenase [NADP], mitochon... [more]
IDH1_CANTR9.069e-8267.69Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDH_SPHYA3.446e-8165.22Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHP_YEAST1.310e-8067.53Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_YEAST3.810e-8064.50Isocitrate dehydrogenase [NADP] cytoplasmic OS=Sac... [more]
IDH2_CANTR1.770e-7765.79Isocitrate dehydrogenase [NADP] peroxisomal OS=Can... [more]
IDHP_ASPNG5.150e-7763.64Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHH_YEAST6.960e-7460.26Isocitrate dehydrogenase [NADP] OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC34109D04EF PostHarvP1 Citrus clementina cDNA clone C34109D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930819 ID=FC930819; Name=FC930819; organism=Citrus clementina; type=EST; length=700bp
GAGTTGCATTGTCCATGTATAACACTGATGAGTCCATCCGAGCTTTTGCT
GAGGCTTCTATGAACACTGCCTATCAGAAGAAGTGGCCACTCTATCTTAG
TACAAAAAACACTATCCTTAAGAAGTATGATGGAAGATTCAAAGACATAT
TTCAAGAGGTTTATGAGGCAAACTGGAAGTCAAAGTTTGAAGCTGCTGGC
ATATGGTATGAACATCGTCTCATTGATGATATGGTAGCTTATGCTCTCAA
AAGTGAAGGAGGTTATGTGTGGGCTTGCAAAAATTATGATGGAGATGTCC
AGAGTGATTTCCTAGCTCAAGGGTTTGGATCTCTTGGATTGATGACATCT
GTACTGGTATGCCCTGATGGGAAGACAATTGAAGCCGAAGCAGCCCATGG
AACAGTTACCCGACACTACAGAGTTCATCAGAAAGGTGGTGAAACTAGCA
CAAACAGCATAGCCTCCATCTTTGCTTGGTCACGAGGGCTTGCACATAGG
GCGAAGTTGGACAACAATGCTAGGCTATTGGATTTTACTGAGAAACTAGA
AGCTGCATGTATTGGCACTGTTGAATCTGGGAAGATGACCAAGGATCTTG
CACTTATTATCCATGGATCTAAGATGACTAGGGAACACTATCTGAATACT
GAAGAGTTCATTGATGCTGTGGCCGACGATCTAAGAGCAGACTCTCTGGC
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