FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.146e-55
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +KHHELKVKD+KTLLFG+KPV VFG+RNPEEIPWAETGAEYVVESTGVFT               VIISAPSKDAPMFVVGVNE  Y P++
Sbjct:   56 YKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPDI 146

HSP 2 Score: 100.138 bits (248), Expect = 5.146e-55
Identity = 48/54 (88.89%), Postives = 49/54 (90.74%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M KVKIGINGFGRIGRLVARV L RDDVELVAVNDPFIT DYM YMFKYD+VHG
Sbjct:    1 MAKVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.526e-54
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKH ++ +KD KTLLFG+KPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE +Y  ++
Sbjct:   56 WKHSDITLKDSKTLLFGDKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146

HSP 2 Score: 107.842 bits (268), Expect = 2.526e-54
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHGH
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGH 55
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 4.292e-54
Identity = 63/91 (69.23%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKHHE+ VKD KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEH+YK ++
Sbjct:   59 WKHHEVNVKDSKTLLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSKDAPMFVVGVNEHQYKSDV 149

HSP 2 Score: 100.523 bits (249), Expect = 4.292e-54
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   78 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            GK+KIGINGFGRIGRLVARV L RDD+ELV VNDPFI+TDYM+YMFKYDSVHG
Sbjct:    5 GKIKIGINGFGRIGRLVARVALTRDDIELVGVNDPFISTDYMSYMFKYDSVHG 57
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 4.293e-54
Identity = 63/91 (69.23%), Postives = 67/91 (73.63%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKHHE+KVKD KTLLFGEK V VFG RNPEEIPW   GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK ++
Sbjct:   56 WKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSDI 146

HSP 2 Score: 102.449 bits (254), Expect = 4.293e-54
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K+KIGINGFGRIGRLVARV LQ DDVELVAVNDPFI+TDYMTYMFKYD+VHG
Sbjct:    1 MAKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PD_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 2 OS=Zea mays GN=GAPC2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.510e-54
Identity = 60/91 (65.93%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKH ++ +KD KTLLFGEKPVTVFG+RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNE +Y  ++
Sbjct:   56 WKHSDIALKDSKTLLFGEKPVTVFGIRNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEDKYTSDV 146

HSP 2 Score: 104.76 bits (260), Expect = 9.510e-54
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHG
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 9.510e-54
Identity = 60/90 (66.67%), Postives = 68/90 (75.56%), Query Frame = 2 
Query:  242 KHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            K HE+K+KD+KTLLFGE PV VFG RNPEEIPW + GA++VVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:   57 KSHEIKLKDEKTLLFGETPVAVFGCRNPEEIPWGQAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 146

HSP 2 Score: 105.916 bits (263), Expect = 9.510e-54
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M KVK+GINGFGRIGRLVARVILQRDD ELVAVNDPFI+TDYMTYMFKYDSVHG
Sbjct:    1 MAKVKVGINGFGRIGRLVARVILQRDDCELVAVNDPFISTDYMTYMFKYDSVHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.240e-53
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNE +Y  ++
Sbjct:   56 WKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146

HSP 2 Score: 104.76 bits (260), Expect = 1.240e-53
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHG
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.240e-53
Identity = 59/91 (64.84%), Postives = 68/91 (74.73%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKH ++K+KD KTLL GEKPVTVFG+RNP+EIPWAE GAEYVVESTGVFT               V+ISAPSKDAPMFV GVNE +Y  ++
Sbjct:   56 WKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDI 146

HSP 2 Score: 104.76 bits (260), Expect = 1.240e-53
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            MGK+KIGINGFGRIGRLVARV LQ +DVELVAVNDPFITTDYMTYMFKYD+VHG
Sbjct:    1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.666e-53
Identity = 62/90 (68.89%), Postives = 67/90 (74.44%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            WK+ EL VKD  TLLFG+KPVTVF  RNPEEIPWA TGA+ +VESTGVFT               VIISAPSKDAPMFVVGVNE+EYKPE
Sbjct:   57 WKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPE 146

HSP 2 Score: 103.99 bits (258), Expect = 4.666e-53
Identity = 49/52 (94.23%), Postives = 51/52 (98.08%), Query Frame = 3 
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+KIGINGFGRIGRLVARV L+RDDVELVAVNDPFITTDYMTYMFKYDSVHG
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHG 55
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.930e-53
Identity = 65/91 (71.43%), Postives = 69/91 (75.82%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WK HE+KVKD+KTLLFGEK V VFG RNPEEIPW E GAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEHEYK +L
Sbjct:   59 WKKHEVKVKDEKTLLFGEKHVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSDL 149

HSP 2 Score: 95.1301 bits (235), Expect = 7.930e-53
Identity = 44/53 (83.02%), Postives = 50/53 (94.34%), Query Frame = 3 
Query:   78 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            GK+KIGINGFGRIGRLVARV LQRDD+ELVAVNDPFI+T+ +T +FKYDSVHG
Sbjct:    5 GKIKIGINGFGRIGRLVARVALQRDDIELVAVNDPFISTESLTSLFKYDSVHG 57
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3PC_CRAPL5.146e-5572.53Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE2.526e-5464.84Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY4.292e-5469.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE4.293e-5469.23Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PD_MAIZE9.510e-5465.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR9.510e-5466.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.240e-5364.84Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.240e-5364.84Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA4.666e-5368.89Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA7.930e-5371.43Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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