FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.395e-28
Identity = 40/83 (48.19%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            ++KV D K L+   K +  +  R+P  IPW ++GAEY+VESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:   58 DIKV-DGKDLVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAPSADAPMYVMGVNEDTY 139          

HSP 2 Score: 71.2478 bits (173), Expect = 1.395e-28
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  L+   VE+VA+NDPFI   Y  YMFKYDS HG
Sbjct:    4 KVGINGFGRIGRVVLRNALETGAVEVVALNDPFIEPHYAEYMFKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.395e-28
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            E+ ++D K ++ G+  ++VF    P EIPW + GA YVVESTGVF                V++SAPS DAPMFV+GVN+ +Y P
Sbjct:   58 EVHMEDGKLIVDGQA-ISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSPDAPMFVMGVNQDKYDP 141          

HSP 2 Score: 72.0182 bits (175), Expect = 1.395e-28
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M ++ +GINGFGRIGRLV R  LQ+  +++ A+NDPFI   YM YMFKYDS HG
Sbjct:    1 MSELCVGINGFGRIGRLVLRACLQKG-IKVTAINDPFIDLQYMVYMFKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.395e-28
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V I INGFGRIGRLV R+ L+R ++++VA+NDPFI+ DY  YMFKYDS HG
Sbjct:    2 VSIAINGFGRIGRLVLRIALERKNIDVVAINDPFISVDYAAYMFKYDSTHG 52          

HSP 2 Score: 68.1662 bits (165), Expect = 1.395e-28
Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            D   L+   K V VF  ++P  +PW + G +  V+STGVF                V+I+APSK APMFVVGVNE +Y  E
Sbjct:   61 DGSNLIINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.816e-28
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            D + L+   KP+  +  R+P  I W+ETGAEY+VESTGVFT               VIISAPS DAPMFV+GVN  +Y
Sbjct:   62 DGQNLVVNGKPIRFYSERDPANIKWSETGAEYIVESTGVFTTIDKAKAHLNGGAKKVIISAPSADAPMFVMGVNHKDY 139          

HSP 2 Score: 67.3958 bits (163), Expect = 1.816e-28
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR++    L++ ++ +VAVNDPFI   Y  YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRILLSNALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.817e-28
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFI+ DY  YMFKYDS HG
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHG 52          

HSP 2 Score: 66.6254 bits (161), Expect = 1.817e-28
Identity = 33/81 (40.74%), Postives = 44/81 (54.32%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            D+ +L+   K V VF  R+P  +PW E   +  ++STGVF                V+I+APS  APMFVVGVNE +Y  E
Sbjct:   61 DENSLIIDGKKVLVFQERDPATLPWGEHNVDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYNGE 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.365e-28
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   YKP++
Sbjct:   64 LVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPDM 141          

HSP 2 Score: 68.5514 bits (166), Expect = 2.365e-28
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHG 51          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.365e-28
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+   + +TVF  R+P  I WA  GAEY+VESTGVFT               VIISAPS DAPMFV GVN   YKP++
Sbjct:   64 LVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYKPDM 141          

HSP 2 Score: 68.5514 bits (166), Expect = 2.365e-28
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ANVVAVNDPFIDVNYMVYLFKFDSTHG 51          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.365e-28
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+ INGFGRIGRLV R+ LQR  +E+VAVNDPFI+ DY  YMFKYDS HG
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRKALEVVAVNDPFISVDYAAYMFKYDSTHG 52          

HSP 2 Score: 65.0846 bits (157), Expect = 2.365e-28
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            E+    +  ++ G K + VF  ++P  +PW + G + V++STGVF                V+I+APSK APMFVVGVNE +Y  E
Sbjct:   57 EVTTSGNDLVIDGHK-IAVFQEKDPANLPWGKLGVDIVIDSTGVFKELDSAQKHLDAGAKKVVITAPSKTAPMFVVGVNEDKYNGE 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.078e-28
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++ L+   K +  F  R+P  IPW  TGA+Y+VESTGVFT               V+ISAPS DAPMFV+GVN   Y  ++
Sbjct:   63 EEGLIVNGKKIRFFAERDPAAIPWGTTGADYIVESTGVFTTQEKAAAHLKGGAKKVVISAPSADAPMFVMGVNNTSYTKDI 143          

HSP 2 Score: 72.0182 bits (175), Expect = 3.078e-28
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  +   +V++VAVNDPFI T Y  YM KYDS HG
Sbjct:    4 KVGINGFGRIGRIVFRNAINHGEVDVVAVNDPFIETHYAAYMLKYDSTHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.079e-28
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+ ING G+IGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG
Sbjct:    2 VKVAINGLGKIGRLVMRIALSRANVEVVAINDPFITVDYAAYMFKYDSTHG 52          

HSP 2 Score: 67.0106 bits (162), Expect = 3.079e-28
Identity = 32/81 (39.51%), Postives = 45/81 (55.56%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            +  TL+   K + VF  R+P ++PW E G +  ++STGVF                V+I+APS  APMFV+GVNE +Y  E
Sbjct:   61 EGNTLVIDGKKIKVFQERDPAQLPWGEEGIDIAIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYAGE 141          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P1_TRIKO1.395e-2848.19Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3PT_DANRE1.395e-2844.71Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_KLUMA1.395e-2866.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_TRIAT1.816e-2850.00Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P2_KLULA1.817e-2868.63Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P2_DROPS2.365e-2851.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME2.365e-2851.28Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P1_KLULA2.365e-2872.55Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_ASPNG3.078e-2844.44Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_ASHGO3.079e-2868.63Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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