FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.007e-28
Identity = 37/81 (45.68%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D+ L+   K +     R+P  IPW + GAEY+VESTGVFT               V+ISAPS DAPMFV+GVN   YK ++
Sbjct:   63 DEGLIVNGKKIRFHTERDPANIPWGQDGAEYIVESTGVFTTQEKASAHLKGGAKKVVISAPSADAPMFVMGVNNETYKKDI 143          

HSP 2 Score: 70.4774 bits (171), Expect = 4.007e-28
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  ++   V++VAVNDPFI T Y  YM KYDS HG
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.007e-28
Identity = 39/79 (49.37%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  263 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            KD   L+   K V     R+P  IPW  +GAEY+VESTGVFT               VIISAPS DAPM+V+GVNE  Y
Sbjct:   61 KDADGLIVNGKKVKFHTERDPSAIPWKASGAEYIVESTGVFTTTEKAKAHLTGGAKKVIISAPSADAPMYVMGVNEKTY 139          

HSP 2 Score: 72.7886 bits (177), Expect = 4.007e-28
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++  ++E+VAVNDPFI  +Y  YM KYDS HG
Sbjct:    3 VKVGINGFGRIGRIVFRNAVEHPEIEVVAVNDPFIDPEYAAYMLKYDSSHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.218e-28
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFIT DY  YMFKYDS HG
Sbjct:    2 VRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHG 52          

HSP 2 Score: 64.3142 bits (155), Expect = 5.218e-28
Identity = 29/82 (35.37%), Postives = 44/82 (53.66%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            DDK ++   K +  +  R+P  +PW  +  +  ++STGVF                V+I+APS  APMFV+GVNE +Y  +L
Sbjct:   61 DDKHIIVDGKKIATYQERDPANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 6.793e-28
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++ INGFGRIGRLV R+ LQR +VE+VA+NDPFI+ DY  YMFKYDS HG
Sbjct:    2 VRVAINGFGRIGRLVMRIALQRKNVEVVALNDPFISNDYSAYMFKYDSTHG 52          

HSP 2 Score: 63.5438 bits (153), Expect = 6.793e-28
Identity = 30/82 (36.59%), Postives = 43/82 (52.44%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            DDK ++     +  F  R+P  +PWA    +  ++STGVF                V+I+APS  APMFV+GVNE +Y  +L
Sbjct:   61 DDKHIIVDGHKIATFQERDPANLPWASLNIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.793e-28
Identity = 40/78 (51.28%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               VIISAPS DAPMFV GVN   Y P++
Sbjct:   64 LVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVNLDAYSPDM 141          

HSP 2 Score: 68.5514 bits (166), Expect = 6.793e-28
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHG 51          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.843e-28
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V + +NGFGRIGRLV R+ + R D+ LVA+NDPFI+TDY  YMFKYDS HG
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKDINLVAINDPFISTDYAAYMFKYDSTHG 52          

HSP 2 Score: 63.1586 bits (152), Expect = 8.843e-28
Identity = 28/81 (34.57%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            D   ++   K V VF  ++P  +PW + G +  ++STG+F                V+I+APS  APM+V+GVNE  Y P+
Sbjct:   61 DKDHIILNGKKVAVFNEKDPAALPWGKLGVDVAIDSTGIFKEMDSANKHIEAGAKKVVITAPSGSAPMYVMGVNEETYTPD 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.843e-28
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++ INGFGRIGR+V R+ ++RD +++VA+NDPFIT DY  YMFKYDS HG
Sbjct:    2 VRVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHG 52          

HSP 2 Score: 63.5438 bits (153), Expect = 8.843e-28
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            DDK L+   K +  +  R+P ++PW +   + V+E+TGVFT               V+I+ PS  APMFV GVN+ +Y  ++
Sbjct:   61 DDKDLIIDGKAIKCYQERDPADLPWGDNDIDIVIEATGVFTAKDLAEKHITAGAKKVVITGPSATAPMFVKGVNDDKYTSDV 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.844e-28
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHG 52          

HSP 2 Score: 62.7734 bits (151), Expect = 8.844e-28
Identity = 31/78 (39.74%), Postives = 42/78 (53.85%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            D K+L+   K V VF  R+P  +PW     +  ++STG+F                V+I+APS  APMFVVGVNE +Y
Sbjct:   61 DGKSLIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-27
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   Y P++
Sbjct:   64 LVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYSPDM 141          

HSP 2 Score: 68.1662 bits (165), Expect = 1.151e-27
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG
Sbjct:    3 KIGINGFGRIGRLVLRAAVDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHG 51          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.151e-27
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHG 52          

HSP 2 Score: 62.3882 bits (150), Expect = 1.151e-27
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            D K L+   K V VF  R+P  +PW     +  ++STG+F                V+I+APS  APMFVVGVNE +Y
Sbjct:   61 DGKALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKY 138          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_EMENI4.007e-2845.68Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_CLAPU4.007e-2849.37Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P3_YEAST5.218e-2870.59Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST6.793e-2870.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P1_DROME6.793e-2851.28Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_ZYGRO8.843e-2866.67Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P1_CANGA8.843e-2864.71Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P2_KLUMA8.844e-2870.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_DROHY1.151e-2750.00Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P3_KLUMA1.151e-2770.59Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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