FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.493e-27
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   39 HSFTAQFHLSRIMGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            H  T    +  +  ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG
Sbjct:   61 HPATPPPKMVSVARELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHG 125          

HSP 2 Score: 71.2478 bits (173), Expect = 1.493e-27
Identity = 33/76 (43.42%), Postives = 46/76 (60.53%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            L+     ++V+  + P++IPW   G+ YVVESTGV+                V+ISAPS DAPMFV+GVNE++Y P
Sbjct:  138 LVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSPDAPMFVMGVNENDYNP 213          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.539e-27
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M + K+GINGFGRIGRLV R    ++ V++V+VNDPFI  +YM YM K DS HG
Sbjct:    1 MSRAKVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHG 54          

HSP 2 Score: 70.8626 bits (172), Expect = 2.539e-27
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVF-TXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            E+  ++ K  + G K ++V   R+P  IPW + GAEYVVESTGVF T               VIISAPS DAPMFVVGVNE+ Y+  +
Sbjct:   59 EVSTENGKLKVNG-KLISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPSADAPMFVVGVNENSYEKSM 145          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.601e-27
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V +GINGFGRIGRLV R  LQ   + +VAVNDPF+  +YM Y+FKYDSVHG
Sbjct:    2 VNVGINGFGRIGRLVLRNALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHG 52          

HSP 2 Score: 67.3958 bits (163), Expect = 5.601e-27
Identity = 34/86 (39.53%), Postives = 47/86 (54.65%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            +++ KD K ++ G K +  F  R P  I WA+ GAEY+VESTGVF                V+I+AP    P +VVGVN  +Y P+
Sbjct:   57 KVETKDGKLIIDGHK-IAAFAEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAKKVVITAPGSGVPTYVVGVNLDKYDPK 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.270e-27
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 3
Query:   90 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG
Sbjct:   65 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHG 112          

HSP 2 Score: 70.0922 bits (170), Expect = 7.270e-27
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            L+     ++VF  + P+EIPW   G+ +VVE+TGV+                V+I APS DAPMFV+GVNE EY P
Sbjct:  125 LVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPSPDAPMFVMGVNEKEYNP 200          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.293e-27
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++I INGFGRIGRLV R+ LQR D+E+VAVNDPFI+ DY  YM KYDS HG
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKDIEVVAVNDPFISNDYAAYMVKYDSTHG 52          

HSP 2 Score: 60.8474 bits (146), Expect = 7.293e-27
Identity = 29/81 (35.80%), Postives = 41/81 (50.62%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            DDK ++     +  +  R+P  +PW     +  V+STGVF                V+I+APS  APMFVVGVN  +Y P+
Sbjct:   61 DDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSSAPMFVVGVNHTKYTPD 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 9.458e-27
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG
Sbjct:   76 ELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHG 126          

HSP 2 Score: 69.3218 bits (168), Expect = 9.458e-27
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            L+     ++V+  + P++IPW + G+ YVVESTGV+                V+ISAPS DAP FV+GVNE+ Y P
Sbjct:  139 LVVDNHEISVYQCKEPKQIPWRDVGSPYVVESTGVYLSIEAASNHISAGAQRVVISAPSPDAPTFVMGVNENNYNP 214          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.601e-26
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++ +GINGFGRIGRLV RV +++  V +VAVNDPFI  +YM YMFKYDS HG
Sbjct:   99 ELTVGINGFGRIGRLVLRVCMEKG-VRVVAVNDPFIDPEYMVYMFKYDSTHG 149          

HSP 2 Score: 67.3958 bits (163), Expect = 1.601e-26
Identity = 31/69 (44.93%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            + VF  + P+EIPW+  G  YVVE+TGV+                VI++APS DAPM V+GVNE +Y P
Sbjct:  169 INVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVNEKDYNP 237          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-26
Identity = 36/82 (43.90%), Postives = 44/82 (53.66%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D+  +    KP+ VF   NPE I W E   +YVVESTG FT               V+ISAPS DAPMFV+GVN   Y+  +
Sbjct:   60 DETHIFVNGKPIRVFNEMNPENIKWGEEQVQYVVESTGAFTTLEKASTHLKNGVEKVVISAPSSDAPMFVMGVNHELYEKNM 141          

HSP 2 Score: 67.0106 bits (162), Expect = 2.725e-26
Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            + + INGFGRIGRLV R   +   + +VA+NDPF++T YM YM +YD+VHG
Sbjct:    1 MNVAINGFGRIGRLVLRASAKNPLINIVAINDPFVSTTYMEYMLEYDTVHG 51          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.979e-26
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++ +GINGFGRIGRLV RV +++  + +VAVNDPFI  +YM YMFKYDS HG
Sbjct:  107 ELTVGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHG 157          

HSP 2 Score: 65.855 bits (159), Expect = 5.979e-26
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            +  +  ++P+EIPW+  G  YVVE TGV+                V+++APS DAPMFV+GVNE +Y P
Sbjct:  177 INTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPSPDAPMFVMGVNEKDYNP 245          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.725e-25
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V IGINGFGRIGRLV R  L+  +  ++A+N+PF+   YM YMFKYDS HG
Sbjct:    3 VPIGINGFGRIGRLVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHG 53          

HSP 2 Score: 66.2402 bits (160), Expect = 1.725e-25
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYK 502
            + VF  ++P  I W+  GAEY+VESTG+F                V+ISAPS DAPM+V+GVNE  Y+
Sbjct:   73 IHVFAEKDPANIKWSSVGAEYIVESTGLFLSTEKAGVHLKGGAKKVVISAPSTDAPMYVMGVNEETYE 140          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3PT_HUMAN1.493e-2753.03Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_SCHMA2.539e-2759.26Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P1_AGABI5.601e-2766.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3PT_BOVIN7.270e-2767.35Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_YEAST7.293e-2770.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3PT_MACFA9.458e-2763.46Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_RAT1.601e-2665.38Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_PHYIN2.725e-2643.90Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3PT_MOUSE5.979e-2663.46Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_DICDI1.725e-2560.78Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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