FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.949e-25
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K ++GINGFGRIGRLV R  +  + V +VAVNDPFI  +YM YMFKYDS HG
Sbjct:    2 KPQVGINGFGRIGRLVLRAAVASNSVNVVAVNDPFIDLEYMVYMFKYDSAHG 53          

HSP 2 Score: 60.077 bits (144), Expect = 4.949e-25
Identity = 31/82 (37.80%), Postives = 42/82 (51.22%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D   L+     +TVF   +   +PW++ GAEY+VESTG+ T               VIISAPS D+    VGVN  +Y P +
Sbjct:   62 DGGKLVIDSHRITVFQEMSASAVPWSQAGAEYIVESTGINTTVEKASAHFQGGAKKVIISAPSADSSHVRVGVNHEKYDPSM 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 8.390e-25
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   44 HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKYNNTL 131          

HSP 2 Score: 55.8398 bits (133), Expect = 8.390e-25
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 3
Query:  114 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            IGRLV R       V++VA+NDPFI   YM YMF+YDS HG  HG+
Sbjct:    1 IGRLVTRAAFNTGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGT 46          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.422e-24
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   48 VKAENGKLVING-KAITIFQERDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHDKYDNSL 132          

HSP 2 Score: 57.3806 bits (137), Expect = 1.422e-24
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 3
Query:  111 RIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            RIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG
Sbjct:    1 RIGRLVTRAAFTSGKVDIVAINDPFIDLNYMVYMFQYDSTHG 42          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.424e-24
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            E+  KD K ++ G K +TVF  R+P  IPW   GA+YVVESTGVFT               VIISAPS DAPMFV GVN   Y P+
Sbjct:   37 EVSTKDGKLVING-KAITVFAERDPANIPWGTVGAQYVVESTGVFTTIEKASAHLKGGAKKVIISAPSSDAPMFVCGVNLDAYDPK 121          

HSP 2 Score: 51.9878 bits (123), Expect = 1.424e-24
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 3
Query:  141 LQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            L+  ++ + AVNDPFI  DYM YMFKYDSVHG
Sbjct:    1 LENPEINITAVNDPFIDLDYMVYMFKYDSVHG 32          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.847e-24
Identity = 34/51 (66.67%), Postives = 41/51 (80.39%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++GINGFGRIGRLV RV+L R     +V +NDPFITTD M Y+FKYD+VHG
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHG 54          

HSP 2 Score: 60.4622 bits (145), Expect = 1.847e-24
Identity = 29/70 (41.43%), Postives = 37/70 (52.86%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            + V   +NP EIPW  +  E V+ES+G FT               V+I+APS DAPMFV GVN    K +
Sbjct:   78 IAVSACKNPAEIPWGASNVEVVIESSGAFTTMEKAHLHQQGGAKKVLITAPSADAPMFVYGVNHQSLKAD 147          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.848e-24
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +++GINGFGRIGR+  R  L  D V++VA+NDPF   +YM YM KYD+VHG
Sbjct:    3 IRLGINGFGRIGRMALRASLNIDGVQVVAINDPFTDCEYMEYMLKYDTVHG 53          

HSP 2 Score: 62.3882 bits (150), Expect = 1.848e-24
Identity = 35/80 (43.75%), Postives = 42/80 (52.50%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            +D   + G K ++VF    PEEIPW +T  + V+E TG FT               VIISAPS DAPMFV G N   Y P
Sbjct:   63 EDSITVNGNK-ISVFKSMKPEEIPWGKTQVDIVLECTGRFTTKKDAELHITGGCKRVIISAPSADAPMFVCGCNLETYDP 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.412e-24
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            ++ KD K L   +KP+TVF  R+P +IPW   GAEY+VESTGVFT               ++ISAPS DAPMFV GVN  +Y P+
Sbjct:   37 VETKDGK-LWINQKPITVFRKRDPVQIPWGSAGAEYIVESTGVFTTTEKASAHLKGGAKKIVISAPSADAPMFVCGVNLDKYDPK 120          

HSP 2 Score: 49.6766 bits (117), Expect = 2.412e-24
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 3
Query:  153 DVELVAVNDPFITTDYMTYMFKYDSVHGHGS 245
            D+++VA+NDPFI   YM YMFKYDSVHG  S
Sbjct:    4 DLDVVAINDPFIDLAYMVYMFKYDSVHGRFS 34          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P3_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhizomucor racemosus GN=GPD3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.519e-23
Identity = 40/83 (48.19%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  263 KDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            KD K ++ G + + V   R+P +IPW   GA+YV+ESTGVFT               VIISAPS DAPMFVVGVN  +Y  +L
Sbjct:   63 KDGKLVVNGHE-IAVHAERDPAQIPWGSHGADYVIESTGVFTTKDAASAHLKGGAKKVIISAPSADAPMFVVGVNLDKYTSDL 144          

HSP 2 Score: 55.8398 bits (133), Expect = 1.519e-23
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  +  GINGF           L+   V++VA+NDPFI  +YM YMFKYDS HG
Sbjct:    1 MSTINTGINGFRSHWPYCLACSLENPKVKVVAINDPFIDLEYMVYMFKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.520e-23
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            D  TL+   K + +  V++P E+ W E GA+ VVESTG+F                VI+SAPSK D PMFV GVN   YK E
Sbjct:   62 DGNTLVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFVYGVNHGTYKGE 143          

HSP 2 Score: 64.3142 bits (155), Expect = 1.520e-23
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVAR-VILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +KIGINGFGRIGR+V R  I    D+E+VA+ND  +  DY+ YM KYDSVHG
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKDIEVVAIND-LLEPDYLAYMLKYDSVHG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.982e-23
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+   + +TVF  R+P  I WA  GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   YKP++
Sbjct:   54 LVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTIEKASTHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPDM 131          

HSP 2 Score: 51.9878 bits (123), Expect = 1.982e-23
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 3
Query:  111 RIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            RIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG
Sbjct:    1 RIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHG 41          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_ECHMU4.949e-2565.38Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P_SHEEP8.390e-2547.19Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MESAU1.422e-2447.67Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BOLED1.424e-2451.16Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MASBA1.847e-2466.67Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P1_GIALA1.848e-2458.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P_AMAMU2.412e-2449.41Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_RHIRA1.519e-2348.19Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Rhiz... [more]
G3P_RALSO1.520e-2343.90Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P2_DROSU1.982e-2351.28Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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