FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.572e-23
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 2 
Query:  260 VKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKPE 508
            V  ++ ++  ++ +  F  RNP ++PW + GA+YVVESTG+FT               VIISAPSKD    P FVVGVN   Y  +
Sbjct:   58 VAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFTTYATAENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNAD 143

HSP 2 Score: 63.1586 bits (152), Expect = 2.572e-23
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG-HGSTM 251
            +KIGINGFGRIGRLVAR+ +    V LV +ND  +    + Y+FKYDS HG +G T+
Sbjct:    2 LKIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSYGGTV 57
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.856e-22
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M  V  GINGFGRIGRLVAR++++  + +L+ VN    T DYM Y FKYDS+HG
Sbjct:   46 MQAVPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHG 99

HSP 2 Score: 57.3806 bits (137), Expect = 7.856e-22
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYK 502
            ++ V  D  ++ G++ +T    R+P++I WA+TG EY+ ESTGVF                VI SAP+KD  + VV GVN  +YK
Sbjct:  104 DVVVDGDDLVIDGQRVITT-RARDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVIFSAPAKDDSLTVVMGVNAEDYK 187
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 62.3882 bits (150), Expect = 1.734e-21
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHG 53

HSP 2 Score: 61.2326 bits (147), Expect = 1.734e-21
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKP 505
            +++ KDD  ++ G   +    VRNP E+PW + GA+YVVESTG+FT               VIISAP+KD       +VGVN   + P
Sbjct:   58 QVEAKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISAPTKDPDRVRTLLVGVNHDLFDP 144
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 1.734e-21
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHG 53

HSP 2 Score: 61.2326 bits (147), Expect = 1.734e-21
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKP 505
            +++ KDD  ++ G   +    VRNP E+PW + GA+YVVESTG+FT               VIISAP+KD       +VGVN   + P
Sbjct:   58 QVETKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDP 144
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.832e-21
Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            +++KD K ++ G  P+TVF  R+P  I W   GA+YVVES+GVFT               VIISAPS DAPMFVVGVN   Y
Sbjct:   38 VEIKDGKLVIDGH-PITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGVNLDAY 118

HSP 2 Score: 45.8246 bits (107), Expect = 3.832e-21
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:  156 VELVAVNDPFITTDYMTYMFKYDSVHG 236
            V+++AV+DPFI   YM YMFKYDSVHG
Sbjct:    6 VKVLAVSDPFIDLQYMVYMFKYDSVHG 32
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.411e-21
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHG 52

HSP 2 Score: 50.8322 bits (120), Expect = 8.411e-21
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 139
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.411e-21
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +++GINGFGRIGR+V R   +R+D+E+V +ND  +  DYM YM KYDS HG
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHG 52

HSP 2 Score: 53.5286 bits (127), Expect = 8.411e-21
Identity = 30/78 (38.46%), Postives = 39/78 (50.00%), Query Frame = 2 
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            L+   K + V   R+P  + W E   + VVESTG+F                V+I+ PSK D PMFV+GVN   YK E
Sbjct:   65 LVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVVITGPSKDDTPMFVMGVNHTTYKGE 142
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.851e-20
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHG 52

HSP 2 Score: 49.6766 bits (117), Expect = 1.851e-20
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.851e-20
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHG 52

HSP 2 Score: 49.6766 bits (117), Expect = 1.851e-20
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.851e-20
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHG 52

HSP 2 Score: 49.6766 bits (117), Expect = 1.851e-20
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P1_SYNY32.572e-2340.70Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3PA_GUITH7.856e-2257.41Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P1_ANAVT1.734e-2151.85Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP1.734e-2151.85Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_LACDT3.832e-2150.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ESCF38.411e-2160.78Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3PC_TRYBB8.411e-2156.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SHIFL1.851e-2060.78Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI1.851e-2060.78Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL61.851e-2060.78Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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