FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.851e-20
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHG 52          

HSP 2 Score: 49.6766 bits (117), Expect = 1.851e-20
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.851e-20
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHG 52          

HSP 2 Score: 51.2174 bits (121), Expect = 1.851e-20
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 502
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 140          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.851e-20
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHG 52          

HSP 2 Score: 51.2174 bits (121), Expect = 1.851e-20
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 502
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:   58 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 140          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.407e-20
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +KIGINGFGRIGR+V R    RDD+E+V +ND  I  +YM YM KYDS HG
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHG 52          

HSP 2 Score: 49.6766 bits (117), Expect = 2.407e-20
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 499
            ++VKD   ++ G K + V   R+P  + W   G +  VE+TG+F                V+++ PSKDA PMFV GVN + Y
Sbjct:   58 VEVKDGNLVVNG-KTIRVTAERDPANLNWGAIGVDIAVEATGLFLTDETARKHITAGAKKVVLTGPSKDATPMFVRGVNFNAY 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.408e-20
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR++ R+  +R D+E++A+ND  +  +Y+ YM KYDS HG
Sbjct:    3 IKVGINGFGRIGRVLFRLAQKRSDIEIIAIND-LLAPEYIAYMLKYDSTHG 52          

HSP 2 Score: 53.9138 bits (128), Expect = 2.408e-20
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            D   ++   K + V  +++PE++ W +   + V+ESTG+F                V+++ PSK D PMFV G N H+Y+ E
Sbjct:   61 DKDNIIINGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFLKREQAYKHILAGSKKVVVTGPSKDDIPMFVRGANFHKYQGE 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.165e-19
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+ INGFGRIGRLV R IL+R+  VE++A+ND  +  D +TY+FK+DS HG
Sbjct:    1 MKVVINGFGRIGRLVLRQILKRNSSVEVLAIND-LVPGDALTYLFKFDSTHG 51          

HSP 2 Score: 57.7658 bits (138), Expect = 1.165e-19
Identity = 28/78 (35.90%), Postives = 41/78 (52.56%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            L+ G++ +     RN + +PW + G + V+E TG+FT               V+ISAP K D P FV+GVN   + PE
Sbjct:   64 LIVGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISAPGKGDIPTFVMGVNHKTFNPE 141          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.515e-19
Identity = 32/86 (37.21%), Postives = 50/86 (58.14%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYKPE 508
            ++ KDD  ++ G K + VF  ++P +IPW + G + V+E+TGVF                VII+AP+K+  + VV GVNE +Y P+
Sbjct:   58 VEAKDDSIVVDG-KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPK 142          

HSP 2 Score: 56.225 bits (134), Expect = 1.515e-19
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +K+GINGFGRIGR   R    R+++E+VA+ND      ++ ++ KYDSVHG
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHG 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.516e-19
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            +KIGINGFGRIGR++ R+  +R+++E+VA+ND  +   Y+ YM KYDS HG+
Sbjct:    3 IKIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGN 53          

HSP 2 Score: 52.7582 bits (125), Expect = 1.516e-19
Identity = 28/87 (32.18%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            +++VK++  ++ G+K + +  +++PE++ W +   + V+ESTG+F                V+I+ PSK D PMFV G N  +YK E
Sbjct:   57 DIEVKNNNLIINGKK-IRITSIKDPEKLMWDKLLIDVVIESTGLFLTKDTAYKHILSGAKKVVITGPSKDDIPMFVRGANFDKYKGE 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 64.3142 bits (155), Expect = 1.516e-19
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R    R D+E+V +ND  +  +YM Y  KYDS HG
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPDIEIVGIND-LLDAEYMAYSLKYDSTHG 51          

HSP 2 Score: 52.7582 bits (125), Expect = 1.516e-19
Identity = 29/76 (38.16%), Postives = 38/76 (50.00%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYK 502
            L+   K + V   R+P  + W E G E VVESTG+F                V+++ P K D PMFV+GVN   YK
Sbjct:   64 LVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVVMTGPPKDDTPMFVMGVNHTTYK 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 62.003 bits (149), Expect = 2.564e-19
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDD-VELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++I INGFGRIGRLV R IL+R+  +E+VA+ND  +  D +TY+FKYDS HG
Sbjct:    1 MRIVINGFGRIGRLVLRQILKRNSPIEVVAIND-LVAGDLLTYLFKYDSTHG 51          

HSP 2 Score: 54.299 bits (129), Expect = 2.564e-19
Identity = 27/80 (33.75%), Postives = 43/80 (53.75%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKP 505
            D  L+ GE+ V     ++ +++PW +   + VVESTG+F                V+I+AP+K D P FV+GVN  ++ P
Sbjct:   61 DGCLVMGERKVHFLAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQQFDP 140          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P1_ECO571.851e-2060.78Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_SALTY1.851e-2058.82Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI1.851e-2058.82Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P_HAEIN2.407e-2062.75Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_BUCAI2.408e-2052.94Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_CHLPN1.165e-1957.69Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_AQUAE1.515e-1937.21Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P_BUCAP1.516e-1953.85Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PC_LEIME1.516e-1956.86Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CHLTR2.564e-1959.62Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
back to top