FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.226e-17
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +++ INGFGRIGRLV R +L + ++E+VAVND     D + ++ KYDS HG
Sbjct:    8 IRVAINGFGRIGRLVFRALLSQKNIEIVAVND-LTHPDTLAHLLKYDSAHG 57          

HSP 2 Score: 51.9878 bits (123), Expect = 2.226e-17
Identity = 32/84 (38.10%), Postives = 40/84 (47.62%), Query Frame = 2
Query:  245 HHELKVK---DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVN 487
            H E K K    D TL+  +K V VF  ++P  +PWAE   + VVESTG F                VIISAP+K   +  V  N
Sbjct:   56 HGEFKKKVVAKDNTLMIDKKKVLVFSEKDPANLPWAEHNIDIVVESTGRFVSEEGASLHLQAGAKRVIISAPAKQKTIKTVVYN 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 55.0694 bits (131), Expect = 2.227e-17
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KIGINGFGRIGR V R  L   +VE+VA+ND       + ++ KYD+VHG
Sbjct:    3 KIGINGFGRIGRNVFRAALNNSEVEVVAIND-LTDAKTLAHLLKYDTVHG 51          

HSP 2 Score: 54.6842 bits (130), Expect = 2.227e-17
Identity = 29/79 (36.71%), Postives = 43/79 (54.43%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEY 499
            ++ +++   K + V   R+P ++PW++ G E VVESTG FT               VIISAP+ D  + VV GVN  +Y
Sbjct:   60 NENSIVVNGKEIKVIAERDPAQLPWSDYGVEVVVESTGRFTKKSDAEKHLGGSVKKVIISAPASDEDITVVMGVNHEQY 138          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.892e-17
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKP 505
            + T+    K + V   RNP +IPW E G + V+ESTG+FT               V+ISAP+KD  +  V+GVN+ +Y P
Sbjct:   63 EDTITVDGKTIKVLSERNPADIPWGELGVDIVIESTGIFTKKADAEKHIAGGAKKVLISAPAKDEDITIVMGVNQDKYDP 142          

HSP 2 Score: 46.595 bits (109), Expect = 4.892e-17
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +++GINGFGRIGR   R +L++  D+E+VAVND    T    ++ KYD++ G
Sbjct:    3 IRVGINGFGRIGRNYFRALLEQGADIEIVAVND-LGDTATTAHLLKYDTILG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 6.360e-17
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR V R  L   +VE+VAVND     + + ++ +YDSVHG
Sbjct:    3 VKVGINGFGRIGRNVFRAALNNPEVEVVAVND-LTDANMLAHLLQYDSVHG 52          

HSP 2 Score: 51.2174 bits (121), Expect = 6.360e-17
Identity = 29/79 (36.71%), Postives = 40/79 (50.63%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 499
            D   L+   K + V   R+P ++ W + G E VVESTG FT               VIISAP+ +  +  V+GVNE +Y
Sbjct:   61 DGNNLVVNGKTIEVSAERDPAKLSWGKQGVEIVVESTGFFTKRADAAKHLEAGAKKVIISAPANEEDITIVMGVNEDKY 139          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CORGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Corynebacterium glutamicum GN=gap PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 1.397e-16
Identity = 31/82 (37.80%), Postives = 41/82 (50.00%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKPE 508
            DD ++  G K + V+  R+P+ + WA    + V+ESTG FT               VIISAP S +   FV GVN   Y PE
Sbjct:   62 DDDSITVGGKRIAVYAERDPKNLDWAAHNVDIVIESTGFFTDANAAKAHIEAGAKKVIISAPASNEDATFVYGVNHESYDPE 143          

HSP 2 Score: 49.6766 bits (117), Expect = 1.397e-16
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQR-DDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +++GINGFGRIGR   R +L+R DD+E+VAVND       ++ + K+DS+ G
Sbjct:    3 IRVGINGFGRIGRNFFRAVLERSDDLEVVAVND-LTDNKTLSTLLKFDSIMG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.343e-16
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYKPEL 511
            E+K+ +++T+    KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +V+GVNE +Y  E+
Sbjct:  142 EVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVIGVNEQDYGHEV 230          

HSP 2 Score: 38.1206 bits (87), Expect = 2.343e-16
Identity = 23/56 (41.07%), Postives = 34/56 (60.71%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 236
            + K+K+ INGFGRIGR   R    R D  +E++ VND     +  +++ KYDS+ G
Sbjct:   83 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKN-ASHLLKYDSMLG 137          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.045e-16
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEY 499
            ++K+ D++T     KP+ V   R+P ++PWAE G + V+E TGVF                VII+AP+K  D P +VVGVNE +Y
Sbjct:  141 DVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGSDIPTYVVGVNEKDY 225          

HSP 2 Score: 39.2762 bits (90), Expect = 3.045e-16
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 236
            + K+K+ INGFGRIGR   R    R D  +++V VND        T++ KYDS+ G
Sbjct:   82 VAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKSATHLLKYDSILG 136          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 6.737e-16
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+ INGFGRIGR V R I++  R D+E+VA+ND     +   ++F++DSVHG
Sbjct:    3 VKVAINGFGRIGRNVLRAIIESGRTDIEVVAIND-LGPVETNAHLFRFDSVHG 54          

HSP 2 Score: 51.6026 bits (122), Expect = 6.737e-16
Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYKPE 508
            E+KV  D T+  G  P+ V  VRNP E+P  E G +  +E TG+FT               V++SAP+  A + VV GVN  +   E
Sbjct:   59 EVKVAGD-TIDVGRGPIKVTAVRNPAELPHKELGVDIALECTGIFTSRDKAAAHLAAGAKRVLVSAPADGADLTVVYGVNHEKLTNE 144          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 1.138e-15
Identity = 29/79 (36.71%), Postives = 41/79 (51.90%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAP-MFVVGVNEHEY 499
            DD ++    K +     RNPE +PW E   + ++ESTGVFT               V+I+AP K+    FV+GVN H+Y
Sbjct:   63 DDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAKKVLITAPGKNEDGTFVIGVNHHDY 141          

HSP 2 Score: 45.4394 bits (106), Expect = 1.138e-15
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRD--DVELVAVNDPFITTDYMT--YMFKYDSVHG 236
            +++ INGFGRIGR  AR  L R+  ++ELVAVND   T+D  T  ++ KYDS+ G
Sbjct:    2 IRVAINGFGRIGRNFARCWLGRENSNIELVAVND---TSDPRTNAHLLKYDSMLG 53          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 60.077 bits (144), Expect = 1.139e-15
Identity = 33/81 (40.74%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKP 505
            DD+ L    K +    V++P+EIPWAE G   V+ESTGVFT               VII+AP+K   +  V+GVN   Y P
Sbjct:   58 DDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDP 138          

HSP 2 Score: 43.8986 bits (102), Expect = 1.139e-15
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVH 233
            +K+GINGFGRIGR V R++  R  VE+  +ND       + ++ KYDS++
Sbjct:    1 MKVGINGFGRIGRQVFRILHSR-GVEVALIND-LTDNKTLAHLLKYDSIY 48          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_MYCPN2.226e-1750.98Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P1_BACCE2.227e-1754.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_STRCO4.892e-1738.75Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P1_BACSU6.360e-1754.90Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_CORGL1.397e-1637.80Glyceraldehyde-3-phosphate dehydrogenase OS=Coryne... [more]
G3PB_PEA2.343e-1638.20Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL3.045e-1640.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_XANFL6.737e-1650.94Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P2_ANAVT1.138e-1536.71Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_THEAQ1.139e-1540.74Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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