FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.712e-14
Identity = 31/87 (35.63%), Postives = 43/87 (49.43%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            ++K   D  +    K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +VVGVN  +Y P+
Sbjct:  125 DVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYNPD 211

HSP 2 Score: 36.965 bits (84), Expect = 9.712e-14
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 3 
Query:   81 KVKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+K+ INGFGRIGR   R    R D   ++++A+ND        +++ KYDS  G
Sbjct:   67 KLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTG-GVKQASHLLKYDSTLG 120
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 49.6766 bits (117), Expect = 9.766e-14
Identity = 28/67 (41.79%), Postives = 35/67 (52.24%), Query Frame = 2 
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHE 496
            + V  +RNP E+PW   G + V+E TG+FT               V+ISAP KD    VV GVN HE
Sbjct:   75 IAVSAIRNPAELPWKSLGVDIVLECTGLFTSRDKAAAHLQAGAGKVLISAPGKDVEATVVYGVN-HE 140

HSP 2 Score: 47.7506 bits (112), Expect = 9.766e-14
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVIL---QRDDVELVAVNDPFITTDYMTYMFKYDSVHGH 239
            +++ INGFGRIGR V R +     R+ +++VA+ND         ++F+YDSVHGH
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAIND-LGDAAVNAHLFQYDSVHGH 56
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 51.9878 bits (123), Expect = 1.268e-13
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 2 
Query:  248 HELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEY 499
            +++ ++ + T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  + VV GVN+ +Y
Sbjct:   61 YDVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITVVLGVNDDKY 146

HSP 2 Score: 45.0542 bits (105), Expect = 1.268e-13
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++GINGFGRIGR   R +L +      D+E+VAVND       + ++ K+DS+ G
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVND-ITDNSTLAHLLKFDSILG 57
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.647e-13
Identity = 29/85 (34.12%), Postives = 45/85 (52.94%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 499
            ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  +  V+GVN+ +Y
Sbjct:   62 DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKY 146

HSP 2 Score: 43.8986 bits (102), Expect = 1.647e-13
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++GINGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILG 57
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.647e-13
Identity = 29/85 (34.12%), Postives = 45/85 (52.94%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 499
            ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  +  V+GVN+ +Y
Sbjct:   62 DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKY 146

HSP 2 Score: 43.8986 bits (102), Expect = 1.647e-13
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            V++GINGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILG 57
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.149e-13
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:   43 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 124

HSP 2 Score: 45.4394 bits (106), Expect = 2.149e-13
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 3 
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHG 37
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.149e-13
Identity = 28/84 (33.33%), Postives = 44/84 (52.38%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 502
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:   43 VEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 125

HSP 2 Score: 45.8246 bits (107), Expect = 2.149e-13
Identity = 20/38 (52.63%), Postives = 26/38 (68.42%), Query Frame = 3 
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDADYMAYMLKYDSTHG 37
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.513e-13
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 3 
Query:   99 NGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG----------HGSTMN 254
            NGFGRIG LV R  L R DV++VA+NDPFI  +YM YMFKYDSVHG          HG T+N
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFIEGEYMAYMFKYDSVHGRYEGDVQGDKHGITIN 62

HSP 2 Score: 73.1738 bits (178), Expect = 7.956e-13
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 2 
Query:  248 HELKVKDDKT-LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            +E  V+ DK  +    + +    + +P +IPW E GA+YVVESTGVFT               V+ISAPS DAPMFV+GVN  +Y P+
Sbjct:   48 YEGDVQGDKHGITINGEQIKTLAMMDPTQIPWGEVGADYVVESTGVFTTVDKCQAHLKGGAKKVVISAPSADAPMFVMGVNADKYDPK 135
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 4.665e-13
Identity = 30/84 (35.71%), Postives = 41/84 (48.81%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 499
            ++K   D  +    K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +VVGVNE  Y
Sbjct:  123 DVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGY 206

HSP 2 Score: 37.7354 bits (86), Expect = 4.665e-13
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 3 
Query:   72 IMGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 236
            +  K+K+ INGFGRIGR   R    R D  +++V +ND        +++ KYDS+ G
Sbjct:   63 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILG 118
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 6.091e-13
Identity = 30/83 (36.14%), Postives = 42/83 (50.60%), Query Frame = 2 
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYKPE 508
            D+ ++    K +     RNP  +PWAE   + V+E+TGVF                V+I+AP K  +   +VVGVN HEYK E
Sbjct:   62 DENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHE 144

HSP 2 Score: 38.1206 bits (87), Expect = 6.091e-13
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 3 
Query:   87 KIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMT--YMFKYDSVHG 236
            ++ INGFGRIGR   R  L R D  +E+V +ND   T+D  T  ++ +YDS+ G
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGIND---TSDPRTNAHLLRYDSMLG 53
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3PA_MAIZE9.712e-1435.63Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_PSEAE9.766e-1441.79Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_MYCAV1.268e-1333.72Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCTU1.647e-1334.12Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO1.647e-1334.12Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P1_ESCFE2.149e-1333.73Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P_CITFR2.149e-1333.33Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PC_SCEVA3.513e-1359.68Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PA_SPIOL4.665e-1335.71Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P2_SYNY36.091e-1336.14Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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