FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.465e-51
Identity = 66/90 (73.33%), Postives = 71/90 (78.89%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            WKHHELKVKD+KTLLFGEK V VFG+RNPEEIPWAE GA++VVESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:   45 WKHHELKVKDEKTLLFGEKSVRVFGIRNPEEIPWAEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKPE 134

HSP 2 Score: 86.6557 bits (213), Expect = 1.465e-51
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 3 
Query:  108 GRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            GRIGRLVARV LQRDDVELVAVNDPFI+TDYMTYMFKYDSVHG
Sbjct:    1 GRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG 43
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.511e-51
Identity = 61/91 (67.03%), Postives = 67/91 (73.63%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WK  ELKVKD KTLLFG+KP+TVFGVRNPEE PW E GAEYVVESTGVFT               V+ISAPS +APMFVVGVNE EYK ++
Sbjct:   55 WKKDELKVKDSKTLLFGDKPLTVFGVRNPEEDPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSGNAPMFVVGVNEKEYKKDI 145

HSP 2 Score: 98.5969 bits (244), Expect = 5.511e-51
Identity = 46/52 (88.46%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+KIGINGFGRIGRLVARV L  DD+ELVAVNDPFITT+YMTYMFKYDSVHG
Sbjct:    2 KMKIGINGFGRIGRLVARVALMSDDIELVAVNDPFITTEYMTYMFKYDSVHG 53
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.492e-41
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 3 
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+K+GINGFGRIGRLVARV L+RDD+ELVA+NDPFIT +YMTYMFKYDS HG
Sbjct:    6 KIKVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHG 57

HSP 2 Score: 93.2041 bits (230), Expect = 1.492e-41
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            WK  E+ +  +  L FG  PV V+  R+P EIPW + GA++VVESTGVFT               V+ISAPSKDAPMFV+GVNE++Y  E
Sbjct:   59 WKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVMGVNENKYSDE 148
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.115e-38
Identity = 64/91 (70.33%), Postives = 67/91 (73.63%), Query Frame = 2 
Query:  239 WKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            WKHHE+KVKD KTLLFGEK V VFG RNPEEIPWA  GAEYVVESTGVFT               VIISAPSKDAPMFV GVNE EYK ++
Sbjct:   24 WKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSKDAPMFVCGVNEKEYKSDI 114

HSP 2 Score: 51.2174 bits (121), Expect = 1.115e-38
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 3 
Query:  171 VNDPFITTDYMTYMFKYDSVHG 236
            VNDPFITTDYMTYMFKYD+VHG
Sbjct:    1 VNDPFITTDYMTYMFKYDTVHG 22
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Gracilaria verrucosa GN=GAPC PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.105e-35
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++ KD K ++ G K +T++G R+P EIPWAE GA+YVVESTGVFT               VIISAPSKDAPMFV GVNE +Y P+L
Sbjct:   60 VETKDGKLIVNG-KSITIYGHRDPAEIPWAEAGADYVVESTGVFTLKEKAEKHFTGGAKKVIISAPSKDAPMFVCGVNEDKYTPDL 144

HSP 2 Score: 75.485 bits (184), Expect = 3.105e-35
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++GINGFGRIGRLV R  +++D + +VA+NDPFI  +YM YMFK+DS HG
Sbjct:    5 QVGINGFGRIGRLVLRAAIEKDTMSVVAINDPFIDLEYMAYMFKFDSTHG 54
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.861e-35
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            +++ KD K ++ G KP++VFG R+P  IPW + GA+YVVESTGVFT               VIISAPS DAPMFV GVN   YKPE
Sbjct:   58 KVETKDGKLVIEG-KPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAPSADAPMFVCGVNLEAYKPE 142

HSP 2 Score: 79.7221 bits (195), Expect = 6.861e-35
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3 
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  L+  D+++VA+NDPFI  DYM YMFKYDS HG
Sbjct:    4 KVGINGFGRIGRIVLRNALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHG 53
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.516e-34
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            E+  KDD  ++ G+  + VFG ++P  IPW + G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:   58 EVTSKDDSLVIDGQS-IKVFGEKDPASIPWGKAGVDYVIESTGVFTTTEGAQKHIDGGAKKVIITAPSSDAPMFVVGVNEQKYTPDL 143

HSP 2 Score: 82.0333 bits (201), Expect = 1.516e-34
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            + IGINGFGRIGRLV R+ LQR D+++VAVNDPFI  +Y  YMFKYDS HG
Sbjct:    3 ITIGINGFGRIGRLVLRIALQRSDIKVVAVNDPFIAPEYAAYMFKYDSTHG 53
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.402e-34
Identity = 45/85 (52.94%), Postives = 51/85 (60.00%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 508
            ++VKD K L    K + VFG ++P  I W E GAEYVVESTGVFT               V+ISAPS DAPMFV GVN   YKPE
Sbjct:   59 VEVKDGK-LYINNKAIAVFGEKDPANIKWGEAGAEYVVESTGVFTTTEKAGVHLKGGAKKVVISAPSADAPMFVCGVNLDAYKPE 142

HSP 2 Score: 81.2629 bits (199), Expect = 7.402e-34
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGR+V R  ++  D+E+VAVNDPFI  DYM YMFKYDS HG
Sbjct:    3 VKVGINGFGRIGRIVLRNAIEHGDLEVVAVNDPFIDLDYMVYMFKYDSTHG 53
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 9.644e-34
Identity = 39/51 (76.47%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +KIGINGFGRIGRLV RV L R D+E+VAVNDPFI  DY  YMFKYDS HG
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKDIEVVAVNDPFIAPDYAAYMFKYDSTHG 53

HSP 2 Score: 80.1073 bits (196), Expect = 9.644e-34
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            E+    D  ++ G K + VF  R+P  IPW ++G +YV+ESTGVFT               VII+APS DAPMFVVGVNE +Y P+L
Sbjct:   58 EVTASGDDLVIDGHK-IKVFQERDPANIPWGKSGVDYVIESTGVFTKVEGAQKHIDAGAKKVIITAPSADAPMFVVGVNEDKYTPDL 143
[Close]
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.256e-33
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 2 
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            ++ KD K ++ G KP+ VFG R+P  IPW  +GA+YVVESTGVFT               VIISAPS DAPM+V GVN   Y P
Sbjct:   59 VEAKDGKLIIAG-KPIAVFGERDPASIPWGASGADYVVESTGVFTTIDKASAHLKGGAKKVIISAPSADAPMYVCGVNLDAYDP 141

HSP 2 Score: 81.2629 bits (199), Expect = 1.256e-33
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 3 
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGRLV R  L+   VE+VAVNDPFI  DYM YMFK+DSVHG
Sbjct:    3 VKVGINGFGRIGRLVIRNALEAQGVEVVAVNDPFIPLDYMVYMFKFDSVHG 53
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3PC_TOBAC1.465e-5173.33Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR5.511e-5167.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA1.492e-4182.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_HORVU1.115e-3870.33Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GRAVE3.105e-3555.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRYCU6.861e-3553.49Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_DEBHA1.516e-3448.28Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CRYNE7.402e-3452.94Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P_CANAL9.644e-3476.47Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P_OMPOL1.256e-3351.19Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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