FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 7.946e-13
Identity = 29/83 (34.94%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G E V E+TG+F                V+++ PSKD+ PMFV G N   Y
Sbjct:   43 VEVKDGHLIVNGKK-IRVTAERDPANLKWNEAGVEVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDSTPMFVRGANFDTY 124          

HSP 2 Score: 44.2838 bits (103), Expect = 7.946e-13
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHG 37          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 1.028e-12
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +++ INGFGRIGR V R I++  R D+E+VA+ND     +   ++ ++DSVHG
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAIND-LGQVETNAHLLRFDSVHG 54          

HSP 2 Score: 45.0542 bits (105), Expect = 1.028e-12
Identity = 25/68 (36.76%), Postives = 34/68 (50.00%), Query Frame = 2
Query:  287 GEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVN 487
            G  P+ V  +RNP E+PWA  G +  +E TG+FT               V++SAP   A   +V GVN
Sbjct:   70 GRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGADRTIVYGVN 135          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.032e-12
Identity = 27/83 (32.53%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEY 499
            ++VKD   ++ G+  + V   ++P  + W E G + V E+TG+F                V+++ PSK D PMFV+GVN   Y
Sbjct:   43 VEVKDGHLVVNGQT-IRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHIAAGAKKVVLTGPSKDDTPMFVMGVNLKSY 124          

HSP 2 Score: 44.2838 bits (103), Expect = 1.032e-12
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHG 37          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.032e-12
Identity = 28/83 (33.73%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDA-PMFVVGVNEHEY 499
            ++VKD   ++ G K + V   ++P  + W E G + V E+TG+F                V+++ PSKDA PMFV G N  +Y
Sbjct:   43 VEVKDGHLVVNG-KTIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDATPMFVRGANFDKY 124          

HSP 2 Score: 44.2838 bits (103), Expect = 1.032e-12
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDAEYMAYMLKYDSTHG 37          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.337e-12
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK--DAPMFVVGVNEHEYK 502
            ++K+ DD  +    K + V   R+P ++PW E   + V+E TGVF                V+I+AP+K  D P +VVGVN H+YK
Sbjct:   52 DVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYK 137          

HSP 2 Score: 32.3426 bits (72), Expect = 1.337e-12
Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = 3
Query:   99 NGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 236
            NGFGRIGR   R +  R +  +E++A+ND        +++ KYDS  G
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSG-GVKQASHLLKYDSTLG 47          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.733e-12
Identity = 27/83 (32.53%), Postives = 40/83 (48.19%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPEL 511
            +   L+   + +TV   R P  +PWAE G + V+E+TG FT               V++SAP+  A +    GVN   Y P+L
Sbjct:   61 EGNVLVVDGRRITVTAEREPANLPWAELGVDIVLEATGRFTSAKAARAHLDAGAKKVLVSAPADGADITLAFGVNTDAYDPDL 143          

HSP 2 Score: 43.5134 bits (101), Expect = 1.733e-12
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +I INGFGRIGR V R +L+RD D+++VAVND       +  +  YD+  G
Sbjct:    3 RIAINGFGRIGRNVLRALLERDSDLDVVAVND-LTEPATLARLLAYDTTSG 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.733e-12
Identity = 24/51 (47.06%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQ-RDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGRLV R +L+ + ++++VA+ND   +   + Y+ K+DS +G
Sbjct:    3 KVGINGFGRIGRLVLRRLLEVKSNIDVVAIND-LTSPKILAYLLKHDSNYG 52          

HSP 2 Score: 43.5134 bits (101), Expect = 1.733e-12
Identity = 22/74 (29.73%), Postives = 35/74 (47.30%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNE 490
            + +L+   K + V+  +  + IPW   GAE +VE TG +T               V+ISAP+ +    V  VN+
Sbjct:   62 EDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISAPAGEMKTIVYKVND 135          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 49.2914 bits (116), Expect = 1.741e-12
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 499
            ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N   Y
Sbjct:   43 VEVKDGHLVVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFDTY 124          

HSP 2 Score: 43.8986 bits (102), Expect = 1.741e-12
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 3
Query:  123 LVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            +V R   +R D+E+VA+ND  +  +YM YM KYDS HG
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHG 37          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 2.250e-12
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 3
Query:   81 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            KV++GINGFGR+GRL  R      ++E V +N+         ++ K+DSVHG
Sbjct:    2 KVRVGINGFGRMGRLALRAAWDWPELEFVHINEIKGGAVAAAHLLKFDSVHG 53          

HSP 2 Score: 46.2098 bits (108), Expect = 2.250e-12
Identity = 24/87 (27.59%), Postives = 47/87 (54.02%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPE 508
            E++ + ++ L+ G  P++      P+++PW + G + V+E +G F                VI++AP K+  +  V+GVN++ Y+PE
Sbjct:   58 EVEAEGERVLIDGT-PLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPE 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.908e-12
Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 2
Query:  293 KPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 508
            K + V   RNP  +PW + G + V+E TGVF                V+I+AP K D P +VVGVN   Y P+
Sbjct:  128 KVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADLYNPD 200          

HSP 2 Score: 37.7354 bits (86), Expect = 2.908e-12
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 3
Query:   72 IMGKVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMFKYDSVHG 236
            +  K+K+ INGFGRIGR   R    R D  ++++A+ND        +++ KYDS  G
Sbjct:   54 VEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLG 109          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P_ESCBL7.946e-1334.94Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_RHOSH1.028e-1245.28Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_SEROD1.032e-1232.53Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_SERMA1.032e-1233.73Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_SCEVA1.337e-1236.05Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_STRAU1.733e-1232.53Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P3_ECO571.733e-1247.06Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]
G3P1_ESCVU1.741e-1233.73Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_ANASP2.250e-1242.31Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PA_TOBAC2.908e-1238.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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