FC930820

Overview
NameFC930820
Unique NameFC930820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:4..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.876e-30
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M K  +GINGFGRIGRLV R  +++D V +VAVNDPFI+ DYM Y+F+YDS HG
Sbjct:    1 MPKPSVGINGFGRIGRLVLRAAVEKDSVNVVAVNDPFISIDYMVYLFQYDSTHG 54          

HSP 2 Score: 72.0182 bits (175), Expect = 5.876e-30
Identity = 36/67 (53.73%), Postives = 42/67 (62.69%), Query Frame = 2
Query:  299 VTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 499
            + V+  R+P EI W  +GA+YVVESTGVFT               VIISAPS DAPMFVVGVN  +Y
Sbjct:   79 IKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAPSADAPMFVVGVNHEKY 145          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.652e-30
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 2
Query:  269 DKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            D+ L+   K +  F  R+P  IPW   GA Y+VESTGVFT               VIISAPS DAPMFV+GVN  EYK ++
Sbjct:   64 DEGLIVNGKKIRFFAERDPAAIPWGSAGAAYIVESTGVFTTTEKASAHLKGGAKKVIISAPSADAPMFVMGVNNKEYKTDI 144          

HSP 2 Score: 73.559 bits (179), Expect = 7.652e-30
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 3
Query:   75 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            M   K+GINGFGRIGR+V R  +   DV++VAVNDPFI T Y  YM KYDS HG
Sbjct:    1 MATPKVGINGFGRIGRIVFRNAIASGDVDVVAVNDPFIETHYAAYMLKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.652e-30
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            ++GINGFGRIGR+V R  L   +V++VA+NDPFI  +YM YMFKYDSVHG
Sbjct:    4 QVGINGFGRIGRIVLRASLSNPEVQVVAINDPFIPLEYMVYMFKYDSVHG 53          

HSP 2 Score: 74.7146 bits (182), Expect = 7.652e-30
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            ++ KD K ++ G K ++VF  R+P +IPW    A YVVESTGVFT               VIISAPS DAPMFV GVN  +Y  +L
Sbjct:   59 VEAKDGKLVVNG-KEISVFSERDPAQIPWGSVEAAYVVESTGVFTSIDAASAHLQGGAKKVIISAPSGDAPMFVCGVNLEKYTSDL 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P1_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schizosaccharomyces pombe GN=tdh1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.653e-30
Identity = 39/84 (46.43%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            +++KD K ++ G   + V   R+P +I W+ +GA+YV+ESTGVFT               VIISAPSKDAPM+VVGVNE ++ P
Sbjct:   60 VEIKDGKLVIDGNA-IDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVGVNEEKFNP 142          

HSP 2 Score: 73.559 bits (179), Expect = 7.653e-30
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 3
Query:   87 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            K+GINGFGRIGR+V R  L    +++VA+NDPFI  +YM YMFKYDS HG
Sbjct:    5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHG 54          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.654e-30
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHGS 245
            + +GINGFGRIGRLV R+ L R D+++VA+NDPFI  +Y +YMFKYDS HG  S
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKDIQIVAINDPFIAPEYASYMFKYDSTHGRYS 56          

HSP 2 Score: 71.2478 bits (173), Expect = 7.654e-30
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 2
Query:  266 DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            + + ++   K + V+  R+P  IPW + G +YV++STGVF                V+I+APS  APMFVVGVNE +Y P+L
Sbjct:   62 EGENIVIDGKKIRVYQERDPVNIPWGKDGVDYVIDSTGVFKELDSAQKHIDAGAKKVVITAPSSTAPMFVVGVNEDKYTPDL 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.654e-30
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFGRIGRLV R       VE+VA+NDPFI  DYM YMF+YDS HG
Sbjct:    2 VKVGINGFGRIGRLVTRAAFLTKKVEIVAINDPFIDLDYMVYMFQYDSTHG 52          

HSP 2 Score: 73.9442 bits (180), Expect = 7.654e-30
Identity = 40/87 (45.98%), Postives = 50/87 (57.47%), Query Frame = 2
Query:  251 ELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            E+K +  K ++ G   +TV+  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   57 EVKAEGGKLVIDGHA-ITVYSERDPANIKWGDAGATYVVESTGVFTTIEKASAHIKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_PIG (Glyceraldehyde-3-phosphate dehydrogenase OS=Sus scrofa GN=GAPDH PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 7.654e-30
Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 2
Query:  245 HHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            H  +K ++ K ++ G K +T+F  R+P  I W + GA YVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   55 HGTVKAENGKLVING-KAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSL 142          

HSP 2 Score: 75.0998 bits (183), Expect = 7.654e-30
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG--HGS 245
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG  HG+
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGT 57          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.961e-30
Identity = 38/52 (73.08%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   78 GKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVH 233
            GK+KIGINGFGRIGRLV R  + R D+E+VA+NDPFI  +YM YMFKYDSVH
Sbjct:    3 GKIKIGINGFGRIGRLVMRATMLRPDIEVVAINDPFIDAEYMAYMFKYDSVH 54          

HSP 2 Score: 65.0846 bits (157), Expect = 9.961e-30
Identity = 35/91 (38.46%), Postives = 47/91 (51.65%), Query Frame = 2
Query:  233 RSWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKP 505
            ++W  H    KD    L   + +  F   +P +I W   GA+ V+ESTGVFT               VII+APS DAPM+V+GVN  +Y P
Sbjct:   55 KTWPGHVNGSKDG--FLVEGRKIHTFTESDPSKINWGAAGADIVIESTGVFTDIAKATAHLTGGAKKVIITAPSNDAPMYVMGVNHEKYNP 143          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 9.966e-30
Identity = 41/86 (47.67%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  254 LKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            +K ++ K ++ G K +T+F  R+P  I W + GAEYVVESTGVFT               VIISAPS DAPMFV+GVN  +Y   L
Sbjct:   58 VKAENGKLVING-KAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYNNTL 142          

HSP 2 Score: 74.3294 bits (181), Expect = 9.966e-30
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+G+NGFGRIGRLV R       V++VA+NDPFI   YM YMF+YDS HG
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHG 52          
BLAST of FC930820 vs. ExPASy Swiss-Prot
Match: G3P_XENLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopus laevis GN=gapdh PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.966e-30
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 2
Query:  278 LLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPEL 511
            L+  ++ +TVF  R+P  I W + GA YVVESTGVFT               V+ISAPS DAPMFVVGVN  +Y+  L
Sbjct:   65 LIINDQVITVFQERDPSSIKWGDAGAVYVVESTGVFTTTEKASLHLKGGAKRVVISAPSADAPMFVVGVNHEKYENSL 142          

HSP 2 Score: 75.485 bits (184), Expect = 9.966e-30
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 3
Query:   84 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHG 236
            VK+GINGFG IGRLV R       V++VA+NDPFI  DYM YMFKYDS HG
Sbjct:    2 VKVGINGFGCIGRLVTRAAFDSGKVQVVAINDPFIDLDYMVYMFKYDSTHG 52          
The following BLAST results are available for this feature:
BLAST of FC930820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
G3P2_CAEEL5.876e-3064.81Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_ASPOR7.652e-3048.15Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P2_RHIRA7.652e-3066.00Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P1_SCHPO7.653e-3046.43Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Schi... [more]
G3P_PICCI7.654e-3062.96Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_DANRE7.654e-3068.63Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P_PIG7.654e-3046.07Glyceraldehyde-3-phosphate dehydrogenase OS=Sus sc... [more]
G3PC_CHLRE9.961e-3073.08Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_BOVIN9.966e-3047.67Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_XENLA9.966e-3048.72Glyceraldehyde-3-phosphate dehydrogenase OS=Xenopu... [more]

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Properties
Property NameValue
Genbank descriptionC34109D05EF PostHarvP1 Citrus clementina cDNA clone C34109D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930820 ID=FC930820; Name=FC930820; organism=Citrus clementina; type=EST; length=511bp
ACACGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACC
GCTCAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAA
CGGATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGG
ACGATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTAC
ATGACATACATGTTTAAGTACGACAGTGTTCACGGTCATGGAAGCACCAT
GAATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGT
CACTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTG
GAGCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAG
GCTGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCC
CAGCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACA
AACCAGAGCTC
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