FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 60/188 (31.91%), Postives = 92/188 (48.94%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYT-ISKYGILGLVKCLAAELGQYGIRVNCVSPYGL--ATGMSMKGG---VDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            +V N V   V KFGK+D +   AG          +   +  + +++++ +G F  AK A    + + KG ILF  SA     G+    +   +K GI  L K LA ELG  GIR NC++P  +    G+    G    + AL +  + ++G+       T  IA + +Y+ S  +SYV+G  LVVDGG
Sbjct:   91 QVENAVKKTVEKFGKIDFVI--AGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAK-ACLKELKKSKGSILFV-SATFHYYGVPFQGHVGAAKAGIDALAKNLAVELGPLGIRSNCIAPGAIDNTEGLKRLAGKKYKEKALAKIPLQRLGS-------TRDIAESTVYIFSPAASYVTGTVLVVDGG 267          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_VIBHA (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio harveyi GN=fabG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 49/173 (28.32%), Postives = 83/173 (47.98%), Query Frame = 1
Query:   40 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            G +DI+ NNAGI   +   ++     +   +IN N    +  +K   R ++ ++ G I+   S    +   G   Y  +K G++G  K +A E+   G+ VN V+P  + T M+     D      S    G L         IA+A ++LAS E++Y++G+ L V+GG  +V
Sbjct:   78 GAIDILVNNAGITRDNL--LMRMKDDEWNDIINTNLTPIYRMSKAVLRGMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDDQRAATLSNVPAGRLGDP----REIASAVVFLASPEAAYITGETLHVNGGMYMV 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FOX2_YEAST (Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces cerevisiae GN=FOX2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 54/180 (30.00%), Postives = 93/180 (51.67%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGIL-DRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGF 549
            +++TA+ +FG++D++ NNAGIL D SF  + +    +   +++V+  GG+  ++ A   +  Q+ G I+ TAS        G   Y+ +K G++GL + LA E  +Y I VN ++P  LA     +  + P +++    Q+G  K        I    LYL + ES+ VS     +  GF
Sbjct:   83 IIETAIKEFGRVDVLINNAGILRDVSFAKMTER---EFASVVDVHLTGGYKLSRAAWPYMRSQKFGRIINTASPAGLFGNFGQANYSAAKMGLVGLAETLAKEGAKYNINVNSIAP--LARSRMTENVLPPHILK----QLGPEK--------IVPLVLYL-THESTKVSNSIFELAAGF 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_VIBCH (3-oxoacyl-[acyl-carrier-protein] reductase OS=Vibrio cholerae GN=fabG PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 50/187 (26.74%), Postives = 96/187 (51.34%), Query Frame = 1
Query:    1 EVINLVDTAVS-KFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            E I  V  A++ +FG +DI+ NNAGI   +   ++   + +   ++  N    F  +K   R ++ +++G I+   S    +   G   Y  +K G++G  K +A E+   G+ VN V+P  + T M+    ++     ++++Q+    G       IA+A  +LAS E++Y++G+ L V+GG  ++
Sbjct:   64 ESIEAVLKAITDEFGGVDILVNNAGITRDNL--LMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTK--ALNDEQRTATLAQVP--AGRLGDPREIASAVAFLASPEAAYITGETLHVNGGMYMI 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: YUXG_BACSU (Uncharacterized oxidoreductase yuxG OS=Bacillus subtilis GN=yuxG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 57/194 (29.38%), Postives = 92/194 (47.42%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKG-CILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKG-----------GVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            +V +  + A   +G +DI+ NNAG+   S     +T   +    +NV   G FL A+ A + +  Q +G  ++F  S  +  AG  + AY+  K     L +C+AAE G++GIRVN V P  +  G ++ G           G++P  +E    +   L       D IA A  + AS ++   +G  + VDGG
Sbjct:  492 DVQSAFERAALAYGGIDIVVNNAGLATSS--PFDETSLKEWNLNMNVLGTGYFLVAREAFKQMKHQNRGGSMVFVGSKNSVYAGKNASAYSSVKALETHLARCIAAEGGEFGIRVNSVLPDAVLQGSAIWGSSWREERAAAYGIEPDQLEEHYRKRTALLVNIYPED-IAEAIAFFASSKAEKTTGCMITVDGG 682          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: YQC8_SCHPO (Uncharacterized oxidoreductase C1739.08c OS=Schizosaccharomyces pombe GN=SPCC1739.08c PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 54/177 (30.51%), Postives = 88/177 (49.72%), Query Frame = 1
Query:   37 FGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGS--PAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLAT---GMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            F ++ ++  NAG+  R   S+LD+P  + E+++N+NT   +  A +  ++   Q  G ++ TAS    I        AY  SK  +  L K LA E  ++  R+N VSP   AT   G       +P +    +     L+G +L          YLAS+ SS+V+G +L+VDGG++
Sbjct:   96 FKEIHVVVANAGMPFRR--SVLDSPPHEFEKVMNINTNSVYRVAYYMGKIFKKQGFGNLIATASMSATIVNAPQHIAAYCASKAAVRQLCKALAVEWAEFA-RINSVSPGYFATDMPGYEFLKQWEPYVPFKRLGLTPELRGTYL----------YLASNASSFVTGLDLIVDGGYT 259          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: SRLD_ECOLI (Sorbitol-6-phosphate 2-dehydrogenase OS=Escherichia coli (strain K12) GN=srlD PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 54/180 (30.00%), Postives = 92/180 (51.11%), Query Frame = 1
Query:   37 FGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCV-------SP--YGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            FG++D++  +AGI   +F  I D    D +R + VN +G FL A+  +R+++    +G I+   S   ++    +  Y+ +K+G +GL + LA +L +YGI V+ +       SP    L    + K G+ P  +E        LK      D + N  L+ AS ++SY +GQ++ V GG
Sbjct:   79 FGRVDLLVYSAGIAKAAF--ISDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDKVPLKRGCDYQD-VLNMLLFYASPKASYCTGQSINVTGG 255          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 54/187 (28.88%), Postives = 94/187 (50.27%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            EV  L   A +    +DI+ NNAGI     G  +    +D + ++ VN    F   +     ++ ++ G I+   S        G   Y  SK G++G  K LA E+    I VNCV+P  + + M+ K  ++    E+ M+ +   + G  ++   +A+A  YLAS+E++YV+GQ + V+GG +++
Sbjct:   66 EVKALGQKAEADLEGVDILVNNAGITKD--GLFVRMSDADWDTVLEVNLTAVFRLTRELTHPMMRRRHGRIINITSVVGVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDK--LNDKQKEAIMAAIPTRRMGTSVE---VASAVAYLASNEAAYVTGQTIHVNGGLAMI 245          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: NODG_AZOBR (Nodulation protein G OS=Azospirillum brasilense GN=nodG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   40 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSM--KGGVDPALIES-SMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            G +DI+ NNAGI    F + +D  K+  + +I  N    F   +  +  +  +  G I+  +S        G   Y+ +K G++G  K LAAEL   G+ VN ++P  + T M M  +  +  A+ +S  M ++G       + D I  A  YLAS+ + YV+G  L ++GG +
Sbjct:   80 GPVDILVNNAGITRDKFFAKMD--KAQWDAVIATNLSSLFNVTQQVSPKMAERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAELATKGVTVNAIAPGYIGTDMVMAIREDIRQAITDSVPMKRLG-------RPDEIGGAVSYLASEIAGYVTGSTLNINGGLN 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: NAHB_PSEPU (1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase OS=Pseudomonas putida GN=nahB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 56/193 (29.02%), Postives = 86/193 (44.56%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDR--SFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK---------GEFLKTDGIANAALYLAS-DESSYVSGQNLVVDGGFSV 555
            L+   + +FG LD    NAGI D   S     +   S  + + ++N    F G   AA   + +  G ++ TAS  +   G G   Y  SK+ +LG+VK LA EL    +RVN VSP G  T  S+ G       +  M  M  +          G   K + +    L LAS  +  +++G  + +DGG ++
Sbjct:   68 LIKQTIDRFGHLDCFIANAGIWDYMLSIEEPWEKISSSFDEIFDINVKSYFSGIS-AALPELKKTNGSVVMTASVSSHAVGGGGSCYIASKHAVLGMVKALAYELAP-EVRVNAVSPGGTVT--SLCGSASAGFDKMHMKDMPGIDDMIKGLTPLGFAAKPEDVVAPYLLLASRKQGKFITGTVISIDGGMAL 256          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SPS19_YEAST7.066e-1231.91Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
FABG_VIBHA7.066e-1228.323-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
FOX2_YEAST1.205e-1130.00Peroxisomal hydratase-dehydrogenase-epimerase OS=S... [more]
FABG_VIBCH1.205e-1126.743-oxoacyl-[acyl-carrier-protein] reductase OS=Vibr... [more]
YUXG_BACSU1.574e-1129.38Uncharacterized oxidoreductase yuxG OS=Bacillus su... [more]
YQC8_SCHPO1.574e-1130.51Uncharacterized oxidoreductase C1739.08c OS=Schizo... [more]
SRLD_ECOLI1.574e-1130.00Sorbitol-6-phosphate 2-dehydrogenase OS=Escherichi... [more]
NODG_RHIS31.574e-1128.88Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
NODG_AZOBR1.574e-1129.89Nodulation protein G OS=Azospirillum brasilense GN... [more]
NAHB_PSEPU1.574e-1129.021,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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