FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHG4_BACME (Glucose 1-dehydrogenase 4 OS=Bacillus megaterium GN=gdhIV PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 64/188 (34.04%), Postives = 98/188 (52.13%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDP---ALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFS 552
            +V+NLV TA+ +FG LD+M NNAG+ +      L     +  ++I+ N  G FLG++ A +  V    KG ++  +S    I       Y  SK G+  + + LA E    GIRVN + P  + T ++ +   DP   A +E SM  MG +     K + +A  A +LAS ++SYV+G  L  DGG +
Sbjct:   71 DVVNLVQTAIKEFGTLDVMINNAGVENPVPSHELSL--DNWNKVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAMNTPINAEKFADPVQRADVE-SMIPMGYIG----KPEEVAAVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 56/169 (33.14%), Postives = 90/169 (53.25%), Query Frame = 1
Query:   43 KLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGF 549
            ++DI+ NNAGI+ R      D P+ + + ++NVN    F+  + A R ++ +  G I+  AS  +   G+  PAYT SK+ + GL K  A E    GI+VN ++P  ++T  +     D    E  + ++    G + + D I   A++LAS  S YV+G  L VDGG+
Sbjct:   87 QIDILVNNAGIIHREKAE--DFPEENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANTKPIRDDEKRNEDILKRIP--AGRWGQADDIGGTAVFLASRASDYVNGHILAVDGGW 251          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG3_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 3, chloroplastic OS=Brassica napus GN=bkr3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 56/187 (29.95%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GEFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 555
            +V  ++ TA+  +G +D++ NNAGI   +   ++   KS  + +I++N  G FL  + A ++++ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D   +E  +  +G +  G + + + +A    +LA S  +SY++GQ   +DGG ++
Sbjct:  136 DVEAMMKTAIDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---MEKKI--LGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 315          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG1_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic OS=Brassica napus GN=gbkr1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 56/187 (29.95%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GEFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 555
            +V  ++ TA+  +G +D++ NNAGI   +   ++   KS  + +I++N  G FL  + A ++++ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D   +E  +  +G +  G + + + +A    +LA S  +SY++GQ   +DGG ++
Sbjct:  141 DVEAMMKTAIDAWGTIDVVVNNAGITRDTL--LIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---MEKKI--LGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQAFTIDGGIAI 320          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.176e-16
Identity = 56/173 (32.37%), Postives = 94/173 (54.34%), Query Frame = 1
Query:   40 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGM--SMKGGVDPALIES--SMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            G +DI++NNAG+ D+  G + + P    +R+I V+  G FL +K+   +++ +  G I+ T+S     A L    Y  +K GI  L K +A +  + GIRVN +SP  + T +   + G  +  + E     ++     G   +   +A  AL+LASD+SSYV+G+++  DGG
Sbjct:   82 GTIDILFNNAGV-DQEGGKVHEYPVDLFDRIIAVDLRGTFLCSKYLIPLML-ENGGSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMAIDYARNGIRVNSISPGTIETPLIDKLAGTKEQEMGEQFREANKWITPLGRLGQPKEMATVALFLASDDSSYVTGEDITADGG 252          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMK----GGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVVN 561
            +V+ L      +F +++++ NNAGI   +  +  DT   D +R + +N +G +  A   A+++ P     I+  AS    +      AY  SK G++ + K LA      GIRV  V+P  + T M  +    G +D + I   +       G   + D IA A  +LAS ++SY++G  LVVDGG+  VN
Sbjct:   69 DVVALRALLEKRFSRIEVLVNNAGI-GPTMAATADTALEDFQRALAINLVGAYSVACETAKLMKPG--AAIVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELERAGKLDVSAIRRRVPL-----GRIARPDEIARAVRFLASAQASYITGSTLVVDGGWMSVN 251          

HSP 2 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 57/183 (31.15%), Postives = 94/183 (51.37%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLG-SPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            EV++L +    +FG LD+  N  G+ +    +  ++P+  L+R+++VN  G F   + AA   +  + G ++    A   ++ L  S AY     GI  L +C AAELG  GIR   V+P  + T  + +      +  +S+ Q   L G     + +A AA +LAS ++SY++G  L VDGG
Sbjct:  337 EVVSLFEELRERFGHLDVFVN--GMNEILVPNTEESPEV-LKRILDVNLTGAFTCVREAA---ISMRSGSVILNLGASLSLSPLAPSHAYGAYNAGIDMLTRCTAAELGPLGIRTATVAPGYIRTCAANRLAAVAGMDSASLRQRIPL-GRVGDAEEVAEAAYFLASFDASYINGSILHVDGG 512          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: KDUD_DICD3 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=kduD PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 54/180 (30.00%), Postives = 97/180 (53.89%), Query Frame = 1
Query:   13 LVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQ-QKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGF 549
            LV+ AV++FGK+DI+ NNAGI+ R     ++  + + + ++N+N    F  ++  AR  + Q   G I+  AS  +   G+  P+YT SK  ++G+ + +A E  ++ I VN ++P  +AT  +     D    +  + ++    G +     +   A++LAS  S YV+G  + VDGG+
Sbjct:   75 LVEKAVAEFGKVDILVNNAGIIRRE--DAIEFSEKNWDDVMNLNIKSVFFMSQTVARQFIKQGHGGKIINIASMLSFQGGIPVPSYTASKKRVMGITRIVANEWAKHNINVNAIAPGYMATNNTQHVRADQDRSKEILDRIP--AGRWGLPQDLQGPAVFLASSASDYVNGYTIAVDGGW 250          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG4_BRANA (3-oxoacyl-[acyl-carrier-protein] reductase 4 (Fragment) OS=Brassica napus GN=bkr4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 56/187 (29.95%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GEFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 555
            +V  ++ TAV K+G +D++ NNAG        ++   KS  + ++++N  G FL ++ A ++++ ++KG I+  AS    I  +G   Y  +K G++G  K  A E     I VN V P  +A+ M+ K G D   +E  +  +G +  G + + + +A    +LA S  +SY++GQ   +DGG ++
Sbjct:   78 DVDAMMKTAVDKWGTIDVVVNNAGDT-----LLIRMKKSQWDEVMDLNLTGVFLCSQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGED---MEKKI--LGTIPLGRYGQPEDVAGLVEFLALSPAASYITGQTFTIDGGIAI 254          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 58/175 (33.14%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   40 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTE-IAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS-----MKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            G++DI+ NNAG+     G+ LD  + D +  I++N  G +   K     ++ ++ G I+  +S   + +A  G  AY +SK  I+GL K LA E  Q GIRVN + P  + T M+          DP  + + M++   L+        +   A +LASDESSY++G   V+DGG
Sbjct:   81 GRIDILVNNAGVC--RLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPLR-RLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 58/175 (33.14%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   40 GKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTE-IAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMS-----MKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            G++DI+ NNAG+     G+ LD  + D +  I++N  G +   K     ++ ++ G I+  +S   + +A  G  AY +SK  I+GL K LA E  Q GIRVN + P  + T M+          DP  + + M++   L+        +   A +LASDESSY++G   V+DGG
Sbjct:   81 GRIDILVNNAGVC--RLGNFLDMSEEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPLR-RLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
DHG4_BACME3.621e-1634.04Glucose 1-dehydrogenase 4 OS=Bacillus megaterium G... [more]
KDUD_BACSU4.729e-1633.142-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
FABG3_BRANA4.729e-1629.953-oxoacyl-[acyl-carrier-protein] reductase 3, chlo... [more]
FABG1_BRANA4.729e-1629.953-oxoacyl-[acyl-carrier-protein] reductase 1, chlo... [more]
YXBG_BACSU6.176e-1632.37Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
Y4VI_RHISN8.066e-1630.37Uncharacterized short-chain type dehydrogenase/red... [more]
KDUD_DICD38.066e-1630.002-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=D... [more]
FABG4_BRANA8.066e-1629.953-oxoacyl-[acyl-carrier-protein] reductase 4 (Frag... [more]
UCPA_SALTY1.054e-1533.14Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI1.054e-1533.14Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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