FC930821

Overview
NameFC930821
Unique NameFC930821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15221 contig Ccv1_Contig15221:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_ECOLI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Escherichia coli (strain K12) GN=fabG PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   31 SKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGGFSVV 558
            ++FG++DI+ NNAGI   +   ++     +   +I  N    F  +K   R ++ ++ G I+   S    +   G   Y  +K G++G  K LA E+   GI VN V+P  + T M+     D      +    G L G       IANA  +LASDE++Y++G+ L V+GG  +V
Sbjct:   75 AEFGEVDILVNNAGITRDNL--LMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGG----AQEIANAVAFLASDEAAYITGETLHVNGGMYMV 244          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_ARATH (3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g24360 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 53/187 (28.34%), Postives = 100/187 (53.48%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK-GEFLKTDGIANAALYLA-SDESSYVSGQNLVVDGGFSV 555
            +V  ++ TA+ K+G +D++ NNAGI   +   ++   +S  + +I +N  G FL  + A ++++ +++G I+  +S    I  +G   Y  +K G++   K  A E     I VN V P  +A+ M+ + G D   +E  +  +G +  G + K + +A    +LA S  +SY++GQ   +DGG ++
Sbjct:  140 DVDAMMKTALDKWGTIDVVVNNAGITRDTL--LIRMKQSQWDEVIALNLTGVFLCTQAAVKIMMKKKRGRIINISSVVGLIGNIGQANYAAAKGGVISFSKTAAREGASRNINVNVVCPGFIASDMTAELGED---MEKKI--LGTIPLGRYGKAEEVAGLVEFLALSPAASYITGQAFTIDGGIAI 319          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: FABG_AQUAE (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aquifex aeolicus GN=fabG PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 58/186 (31.18%), Postives = 95/186 (51.08%), Query Frame = 1
Query:    1 EVINLVDTAVSKFGKLDIMYNNAGIL-DRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLK---GEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            E+ NLVD        +DI+ NNAGI  D+ F   L     D E ++ VN  G FL  +++ R ++ Q+ G I+  +S       +G   Y+ +K G++G  K LA EL    + VN V+P  + T M+       A++   + Q    +   G F   + +AN  L+L S+ +SY++G+ + V+GG
Sbjct:   78 EIYNLVDG-------IDILVNNAGITRDKLF---LRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMT-------AVLSEEIKQKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: DHB8_HUMAN (Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens GN=HSD17B8 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 52/166 (31.33%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   52 IMYNNAGILDRSFGSILDTPKSDLERLINVNTIGGFLGAKHAARVVVPQQ-KGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGEFLKTDGIANAALYLASDESSYVSGQNLVVDGG 546
            ++ + AGI    F  +L   + D +++I VN  G FL  + AA+ +V    +G I+  +S   ++  +G   Y  SK G++GL +  A ELG++GIR N V P  +AT M+ K    P  +   +++M  + G     + +A+   +LAS++S Y++G ++ V GG
Sbjct:   99 VVVSCAGITQDEF--LLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK---VPQKVVDKITEMIPM-GHLGDPEDVADVVAFLASEDSGYITGTSVEVTGG 258          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_SHIFL (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella flexneri GN=hcaB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTTSKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_SHIF8 (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=hcaB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTTSKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_SHIBS (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=hcaB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_ECOSE (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain SE11) GN=hcaB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLI (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain K12) GN=hcaB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
BLAST of FC930821 vs. ExPASy Swiss-Prot
Match: HCAB_ECOLC (3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hcaB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 58/149 (38.93%), Postives = 81/149 (54.36%), Query Frame = 1
Query:   16 VDTAVSKFGKLDIMYNNAGILDRSFGSILDTPKSDLE----RLINVNTIGGFLGAKHAARVVVPQQKGCILFTASACTEIAGLGSPAYTISKYGILGLVKCLAAELGQYGIRVNCVSPYGLATGMSMKGGVDPALIESSMSQMGNLKGE 450
            VD  +++ GKLD    NAGI D +  S+++TP   LE     L NVN +G  LGAK  A  ++  + G ++FT S      G G P YT SK+   GL++ LA EL    +RVN V P G+A+   ++G    AL +S  S M +L  E
Sbjct:   71 VDQILTRSGKLDCFIGNAGIWDHN-ASLVNTPAETLETGFHELFNVNVLGYLLGAKACAPALIASE-GSMIFTLSNAAWYPGGGGPLYTASKHAATGLIRQLAYELAP-KVRVNGVGPCGMAS--DLRG--PQALGQSETSIMQSLTPE 212          
The following BLAST results are available for this feature:
BLAST of FC930821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
FABG_ECOLI2.595e-1430.683-oxoacyl-[acyl-carrier-protein] reductase OS=Esch... [more]
FABG_ARATH3.389e-1428.343-oxoacyl-[acyl-carrier-protein] reductase, chloro... [more]
FABG_AQUAE3.389e-1431.183-oxoacyl-[acyl-carrier-protein] reductase OS=Aqui... [more]
DHB8_HUMAN3.389e-1431.33Estradiol 17-beta-dehydrogenase 8 OS=Homo sapiens ... [more]
HCAB_SHIFL4.426e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_SHIF84.426e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_SHIBS4.426e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOSE4.426e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLI4.426e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]
HCAB_ECOLC4.426e-1438.933-phenylpropionate-dihydrodiol/cinnamic acid-dihyd... [more]

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Properties
Property NameValue
Genbank descriptionC34109D06EF PostHarvP1 Citrus clementina cDNA clone C34109D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930821 ID=FC930821; Name=FC930821; organism=Citrus clementina; type=EST; length=672bp
GAAGTCATCAATCTCGTTGATACCGCCGTTTCTAAATTTGGAAAGCTCGA
TATCATGTACAACAATGCAGGAATTCTTGACCGCAGCTTTGGGAGCATTT
TGGACACTCCAAAGTCTGATCTAGAACGCTTAATTAATGTAAACACTATA
GGTGGTTTCTTAGGAGCCAAGCATGCTGCAAGAGTCGTGGTGCCACAGCA
AAAAGGTTGCATACTGTTTACAGCTAGTGCTTGTACAGAAATTGCAGGGC
TTGGCTCCCCTGCTTATACAATATCCAAATATGGGATTTTAGGACTAGTA
AAGTGCTTGGCAGCAGAGCTTGGACAGTATGGAATAAGAGTAAATTGCGT
CTCGCCTTATGGTTTGGCGACAGGAATGTCGATGAAAGGTGGGGTCGATC
CGGCTCTAATAGAATCATCAATGAGCCAGATGGGTAATCTAAAAGGGGAA
TTTCTAAAAACTGATGGCATTGCAAATGCTGCCCTCTATTTGGCTAGTGA
TGAATCAAGTTATGTGAGCGGGCAAAATCTTGTTGTGGATGGAGGATTCA
GCGTGGTGAATCCTACAGTTATGAGGGCTTACGGTCTTATCAAGTAATCA
ATTGGAGCTTTAATTTGTAGATAATGGGGGATGCCGTACTCTGCTGCGTA
CGTGTAAGAATGCATTCATTTT
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