FC930825

Overview
NameFC930825
Unique NameFC930825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1852..2536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.562e-65
Identity = 122/226 (53.98%), Postives = 153/226 (67.70%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            + INGLARQ+L+NADGIIE SF PGKYS+E SS  Y K W F  +ALP DL+ RGLA+EDPSAPHGL+L IEDYP+A DGL++WDAIK WV +YV+ YYP  + V+ D ELQAWW E    GHGD K +PWWP ++T +DLI+  + IVW  S  HAAVNFGQY YGG   NRPT AR  I  E     ++   +  P+ A L T   +      ++++  LS H+
Sbjct:  562 ININGLARQSLINADGIIEKSFLPGKYSIEMSSSVY-KNWVFTDQALPADLVKRGLAIEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKTWVHEYVSLYYPTDAAVQQDTELQAWWKEAVEKGHGDLKEKPWWPKMQTTEDLIQSCSIIVWTASALHAAVNFGQYPYGGLILNRPTLARRFIPAE--GTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHA 784          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.454e-65
Identity = 114/226 (50.44%), Postives = 155/226 (68.58%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+NA G++ES+  P K++ME S+V Y K W F  +ALP DL+ RG+AVED S+PHG++L I+DYP+A DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWW  ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q      ++++  LS H+
Sbjct:  558 MNINALARQILINAGGVLESTVFPSKFAMEMSAVVY-KDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIDDYPYAVDGLEIWSAIKSWVTDYCSFYYGSNEEILKDNELQAWWKEVREVGHGDKKNEPWWAEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRKFM--PEPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHT 780          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.833e-64
Identity = 115/226 (50.88%), Postives = 154/226 (68.14%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN  ARQ LVNA G++ES+    K++ME S+V Y K W F  +ALP DL+ RG+AVED S+PHG++L IEDYP+A DGL++W AIK WVTDY + YY     +  D ELQAWW E+R VGHGDKK+EPWWP ++TP++LI+  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q      ++++  LS H+
Sbjct:  559 MNINASARQLLVNAGGVLESTVFQSKFAMEMSAVVY-KDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMETPQELIDSCTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRFM--PEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHT 781          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.832e-64
Identity = 116/226 (51.33%), Postives = 144/226 (63.72%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            ++IN LARQ L+N DG+IES F+PG   ME S+ AY + WR D E LP DLI RG+AVEDPS PHGL+L IEDYP+A DGL LW AI +W   YV  YYP    V++D ELQ+W+ E    GH DK+  PWWP L TP DL  ++TT+VW+ S  HAA+NFGQY  GGY PNRP   R  +  E   D ++   +  P    L+  PS    T  M ++  LSTHS
Sbjct:  596 LKINALARQILINGDGVIESGFTPGNVCMEMSAFAYRELWRLDQEGLPADLIRRGMAVEDPSQPHGLRLLIEDYPYAADGLLLWSAISRWCEAYVAAYYPSDEAVQADYELQSWYAEAVQSGHADKRGAPWWPRLSTPGDLASLLTTLVWLCSAQHAALNFGQYPLGGYIPNRPPLMRRLVPAE--GDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHS 819          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.190e-62
Identity = 113/226 (50.00%), Postives = 152/226 (67.26%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR  L+N+DG++E +  P +Y+ME SS  Y K W F  +ALPKDL+ RG+AVEDP++ +G+KL IEDYPFA DGL++W AIK WVT+Y   YY +   V++D E+Q+WWTE+RT GHGDK+HE WWP ++T  DLIE  T I+W+ S  HAAVNFGQY Y G+ PNRPT +R  +   +P  +++       + A L T   Q      ++I+  LS HS
Sbjct:  579 MNINALARHVLINSDGVLERTVFPSRYAMEMSSSIY-KNWVFTEQALPKDLLKRGVAVEDPNSDNGVKLLIEDYPFAVDGLEIWSAIKTWVTEYCTFYYNNDKTVQTDTEIQSWWTELRTKGHGDKRHESWWPSMQTRDDLIETCTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRFM--PEPGTDEYAELEEDADVAFLKTITPQLQTLLGISIIEILSMHS 801          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.463e-62
Identity = 110/226 (48.67%), Postives = 152/226 (67.26%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR++LVNADGIIE +F  G+Y++E S+V Y K W    +ALP DL+ RG+AV+DPSAPHG+KL IEDYP+A+DGL++WDAIK WV +YV  YY    +++ D ELQAWW E+  VGHGD K +PWWP +++ ++L+E+ TT++W+ S  HAAVNFGQY YGG   NRPT +R  +   +    ++      PE   L T   +      + ++  LS H+
Sbjct:  444 MNINSLARKSLVNADGIIEKTFLWGRYALELSAVIY-KDWSLHDQALPNDLVKRGVAVKDPSAPHGVKLVIEDYPYASDGLEIWDAIKSWVVEYVAFYYKSDEVLQQDSELQAWWKELVQVGHGDLKDKPWWPKMQSRENLVEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFM--PEKGSAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRHA 666          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 113/226 (50.00%), Postives = 150/226 (66.37%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ+L+NA G+IE SF PG++++E SS  Y K W F  +ALP DLI RG+AVEDPS+P+GL+L +EDYP+A DGL++WD I+ WV DYV+ YYP    V+ D ELQAWW E    GHGD K +PWWP L TP+DLI   + I+W+ S  HAAVNFGQY YGG+  NRPT  R  +   +P  +++       + A L T   +  A   ++++  LS H+
Sbjct:  559 MNINALARQSLINAGGVIERSFLPGEFAVEMSSAVY-KSWVFTDQALPADLIKRGMAVEDPSSPYGLRLVVEDYPYAVDGLEIWDTIQTWVKDYVSLYYPTNDAVKKDTELQAWWKEAVEKGHGDLKDKPWWPKLNTPQDLIHTCSIIIWIASALHAAVNFGQYPYGGFILNRPTITRRLL--PEPGTKEYGELTSNYQKAYLRTITGKVEAIVDLSVIEILSRHA 781          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.530e-61
Identity = 114/226 (50.44%), Postives = 149/226 (65.93%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR+ALVNADGIIE +F  G+YSME S+V Y K W F  +ALP DL+ RG+AV+DPSAPHG++L IEDYP+A+DGL++WDAIK WV +YV+ YY     ++ D ELQAWW E+  VGHGD K +PWW  ++T ++L+E    ++W+ S  HAAVNFGQY YGG   NRPT +R     E  S E +      PE   L T   +      + ++  LS H+
Sbjct:  550 MNINSLARKALVNADGIIEKTFLWGRYSMEMSAVIY-KDWVFTDQALPNDLVKRGVAVKDPSAPHGVRLLIEDYPYASDGLEIWDAIKSWVQEYVSFYYKSDEELQKDPELQAWWKELVEVGHGDLKDKPWWQKMQTREELVEASAILIWIASALHAAVNFGQYPYGGLILNRPTISR-RFMPEKGSPE-YDALAKNPEKEFLKTITGKKETLIDLTVIEILSRHA 772          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.900e-60
Identity = 114/226 (50.44%), Postives = 151/226 (66.81%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ+L+NADGIIE SF P K+S+E SS  Y K W F  +ALP DLI RG+A++DPSAPHGL+L IEDYP+A DGL++W AIK WV +YV+ YY     V+ D ELQ WW E    GHGD K +PWWP L+T ++L+EI T I+W  S  HAAVNFGQY YGG+  NRPT++R  +   +    +++  +   + A L T  S+      ++++  LS H+
Sbjct:  564 MNINALARQSLINADGIIEKSFLPSKHSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSAPHGLRLLIEDYPYAVDGLEIWAAIKTWVQEYVSLYYARDDDVKPDSELQQWWKEAVEKGHGDLKDKPWWPKLQTIEELVEICTIIIWTASALHAAVNFGQYPYGGFILNRPTSSRRLL--PEKGTPEYEEMVKSHQKAYLRTITSKFQTLVDLSVIEILSRHA 786          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.900e-60
Identity = 112/227 (49.34%), Postives = 148/227 (65.20%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATED-PSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+N  GI E +  P KY+ME SS  Y   W F  +ALP +L  RG+AVEDP APHGL+L I+DYP+A DGL++W AI+ WV DY+  +Y  +  +++D ELQAWW E+R  GHGDKK EPWWP ++T ++L+E  T I+WV S  HAAVNFGQY   GY PNRPT +R  +  E+ P  E+ +     P+   L T  +Q      ++++  LSTHS
Sbjct:  556 MNINALARQILINGGGIFEITVFPSKYAMEMSSFIYKNHWTFPDQALPAELKKRGMAVEDPEAPHGLRLRIKDYPYAVDGLEVWYAIESWVRDYIFLFYKIEEDIQTDTELQAWWKEVREEGHGDKKSEPWWPKMQTREELVESCTIIIWVASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEELEK---NPDKVFLKTITAQLQTLLGISLIEILSTHS 779          
The following BLAST results are available for this feature:
BLAST of FC930825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOXX_SOYBN2.562e-6553.98Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOXA_SOLLC7.454e-6550.44Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_SOLTU2.833e-6450.88Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX5_ORYSJ4.832e-6451.33Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX5_ARATH1.190e-6250.00Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXB_PHAVU3.463e-6248.67Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]
LOXA_PHAVU4.522e-6250.00Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]
LOX4_SOYBN6.530e-6150.44Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX2_SOYBN1.900e-6050.44Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOX1_ARATH1.900e-6049.34Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34109D10EF PostHarvP1 Citrus clementina cDNA clone C34109D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930825 ID=FC930825; Name=FC930825; organism=Citrus clementina; type=EST; length=685bp
GAAATGGAGATCAATGGGTTGGCTCGACAAGCTCTTGTTAATGCTGATGG
AATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCT
CTGTTGCCTATGACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAA
GACCTAATTAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGG
CTTGAAGCTAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATC
TCTGGGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTAC
CCTGATAAAAGCCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGAC
TGAAATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGC
CTGTCTTGAAAACCCCTAAGGATTTAATTGAAATCATCACAACTATTGTT
TGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACACTTA
CGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCA
CTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTTGAAAACCTGAA
AATGCACTTTTGAATACCTTCCCTTCCCAGAATTCAGCTACTAAAGTTAT
GGCTATTCTTTGATGTTTATCGACTCATTCTCCTG
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