FC930825

Overview
NameFC930825
Unique NameFC930825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1852..2536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 7.220e-60
Identity = 112/226 (49.56%), Postives = 150/226 (66.37%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ+L+NA+GIIE++F P KYS+E SS  Y K W F  +ALP DLI RG+A++DPS PHG++L IEDYP+A DGL++W AIK WV +YV  YY     V++D ELQ WW E    GHGD K +PWWP L+T +DL+E+   I+W+ S  HAAVNFGQY YGG   NRPT +R  +   +    +++  +   E A L T  S+      ++++  LSTH+
Sbjct:  536 MNINALARQSLINANGIIETTFLPSKYSVEMSSAVY-KNWVFTDQALPADLIKRGVAIKDPSTPHGVRLLIEDYPYAADGLEIWAAIKTWVQEYVPLYYARDDDVKNDSELQHWWKEAVEKGHGDLKDKPWWPKLQTLEDLVEVCLIIIWIASALHAAVNFGQYPYGGLIMNRPTASRRLL--PEKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHA 758          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.608e-59
Identity = 111/226 (49.12%), Postives = 149/226 (65.93%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR +LVN  GIIE +F  G+YSME SS  Y K W F  +ALP DLI RG+A+EDPS+P G+KL +EDYP+A DGL++W  IK WV DYV+ YY     +  D ELQAWW E+  VGHGDKK+EPWWP ++T +DLIE+ + ++W  S  HAAVNFGQY+YGG   NRPT +R  +   +    +++  +  P+ A L T   +      ++++  LS H+
Sbjct:  559 MNINSLARLSLVNDGGIIEKTFLWGRYSMEMSSKVY-KNWVFTEQALPADLIKRGMAIEDPSSPCGVKLVVEDYPYAVDGLEIWAIIKTWVQDYVSLYYTSDEKLRQDSELQAWWKELVEVGHGDKKNEPWWPKMQTREDLIEVCSIVIWTASALHAAVNFGQYSYGGLILNRPTLSRRFM--PEKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHA 781          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.583e-59
Identity = 107/226 (47.35%), Postives = 151/226 (66.81%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+NA GI E +  PGK+++  S+V Y K W+F  + LP DLI RG+AVEDPS+P+ ++L + DYP+A DGL +W AI+Q+V++Y+  YYP+  +++ D E+QAWW E R VGHGD K  PWWP +++  +L +  TTI+W+ S  HAAVNFGQY Y G+ PNRPT +R  +   +P  E++      PE A ++T  SQ      +++L  LS HS
Sbjct:  554 MTINALARQTLINAGGIFEMTVFPGKFALGMSAVVY-KDWKFTEQGLPDDLIKRGMAVEDPSSPYKVRLLVSDYPYAADGLAIWHAIEQYVSEYLAIYYPNDGVLQGDTEVQAWWKETREVGHGDLKDAPWWPKMQSVPELAKACTTIIWIGSALHAAVNFGQYPYAGFLPNRPTVSRRRM--PEPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHS 776          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.778e-58
Identity = 106/226 (46.90%), Postives = 145/226 (64.16%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+N  GI E +  PGK+++  SS  Y K W F  + LP DLI RG+A++DPS+P  +KL I+DYP+A DGL +W AI+QWVT+Y   YYP+  +++ D ELQAWW E+R VGHGD K   WWP +++  +L +  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P  +++      PE   + T  SQ      ++++  LS HS
Sbjct:  555 MTINALARQTLINGGGIFEQTVFPGKHALAMSSAVY-KNWNFTEQGLPDDLIKRGIAIKDPSSPSKVKLLIKDYPYATDGLAIWQAIEQWVTEYCAIYYPNDGVLQGDVELQAWWKEVREVGHGDLKDADWWPKMQSLPELTKACTTIIWIASALHAAVNFGQYPYAGYLPNRPTISRRPM--PEPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHS 777          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.323e-58
Identity = 110/226 (48.67%), Postives = 147/226 (65.04%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M INGLAR +LVN  G+IE +F  G+YS+E S+V Y K W F  +ALP DLI RG+A+EDPS PHG++L IEDYP+A DGL++WDAIK WV +YV  YY     +  D ELQA W E+  VGHGDKK+EPWWP ++T ++L+E    I+W  S  HAAVNFGQY YGG   NRPT +R  +   +    +++     P+ A L T   +      ++++  LS H+
Sbjct:  555 MNINGLARLSLVNDGGVIEQTFLWGRYSVEMSAVVY-KDWVFTDQALPADLIKRGMAIEDPSCPHGIRLVIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDDTLREDPELQACWKELVEVGHGDKKNEPWWPKMQTREELVEACAIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRFM--PEKGSAEYEELRKNPQKAYLKTITPKFQTLIDLSVIEILSRHA 777          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.033e-58
Identity = 106/226 (46.90%), Postives = 146/226 (64.60%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+N  GI E +  P K+++  SS  Y K W F  +ALP DL+ RG+AV DP++P+ ++L IEDYP+ANDGL +W AI+QW T+Y+  YYP+  +++ D ELQAWW E+R VGHGD K   WWP +KT  +L++   TI+W+ S  HAAVNFGQY Y GY PNRP+ +R  +   +P  +++      PE   + T   Q  A   +++L  LS HS
Sbjct:  562 MTINALARQTLINGGGIFEMTVFPRKHALAMSSAFY-KDWSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWPEMKTVAELVKACATIIWIGSALHAAVNFGQYPYAGYLPNRPSVSRRPM--PEPGTKEYDELARDPEKVFVRTITKQMQAIVGISLLEILSKHS 784          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.962e-58
Identity = 108/229 (47.16%), Postives = 151/229 (65.94%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENA---LLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+NADGI E +  PGKY++E SSV Y K W+F  +ALP DL+ RG+AV DP++P+ ++L I+DYP+A DGL +W AI++WV +Y+  YYP+  ++  DEELQAWW E+R VGHGD K + WWP + T ++L    T I+W+ S  HAAVNFGQY Y G+ PNRPT +R  +   +P  E++       + A    ++T  SQ      ++++  LS HS
Sbjct:  565 MNINALARQTLINADGIFEKTVFPGKYALEMSSVVY-KNWKFTEQALPVDLVKRGVAVPDPTSPYNVRLLIKDYPYAVDGLVIWWAIERWVGEYLAIYYPNDGVLRGDEELQAWWKEVREVGHGDLKDQDWWPKMDTVQELTRACTIIIWIASALHAAVNFGQYPYAGFLPNRPTVSRRPM--PEPGTEEYAKLERGGDEADLVFIHTITSQFQTILGISLIEILSKHS 790          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.758e-58
Identity = 108/226 (47.79%), Postives = 144/226 (63.72%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LARQ L+NA GI E +  PGKY++  SS+ Y K W F  + LP DLI RG+AVED ++P+ ++L I+DYP+A DGL++W AI+QWV +Y+  YY D  ++  D ELQAWW E+R VGHGD K   WWP +    +L +  TTI+W+ S  HAAVNFGQY Y GY PNRPT +R  +   +P  E +      PE A + T  SQ      ++++  LS HS
Sbjct:  558 MTINALARQTLINAGGIFEMTVFPGKYALWMSSMVY-KNWNFTEQGLPADLIKRGVAVEDATSPYKVRLLIKDYPYAADGLEIWHAIEQWVGEYLAIYYTDDGVLRGDAELQAWWAEVREVGHGDLKGAAWWPRMDAVSELRDACTTIIWIASALHAAVNFGQYPYAGYLPNRPTVSRRRM--PEPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHS 780          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.966e-57
Identity = 110/226 (48.67%), Postives = 145/226 (64.16%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR  LVNA+GIIES+F  G Y+ME S+V Y K W F  + LP DLI RG+AV+DPS+PHG++L IEDYP+A+DGL++W AIK WV +YVN YY   + +  D ELQA+W E+  VGHGD K   WW  ++  K+LIE  + ++W+ S  HAAVNFGQY YGGY  NRPT +R  +   +    ++       E A L T   +N     + I+  LS H+
Sbjct:  563 MNINALARNVLVNAEGIIESTFLWGNYAMEMSAVVY-KDWVFPDQGLPNDLIKRGVAVKDPSSPHGVRLLIEDYPYASDGLEIWAAIKSWVEEYVNFYYKSDAAIAQDAELQAFWKELVEVGHGDLKSATWWFKMQNRKELIEACSILIWIASALHAAVNFGQYPYGGYILNRPTKSRKFM--PEKGTPEYDDLAKNYEKAYLRTITPKNDTLTDLTIIEVLSRHA 785          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.568e-57
Identity = 111/226 (49.12%), Postives = 144/226 (63.72%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR+ L   DG  E+S  P KYSME S+ AY K W F  +ALP DL+ RG+AVED S+PHG++L I DYP+A DGL++W AIK WVT+Y   YY     VE D ELQAWW E+R  GHGDKK E WWP L+T ++L +  T I+W+ S  HAA++FG Y+Y GY PNRPT + CN+  E P   +++     P+   L TF  Q  +   ++I    S H+
Sbjct:  558 MNINALARETLTY-DGGFETSLFPAKYSMEMSAAAY-KDWVFPEQALPADLLKRGVAVEDLSSPHGIRLLILDYPYAVDGLEIWAAIKSWVTEYCKFYYKSDETVEKDTELQAWWKELREEGHGDKKDEAWWPKLQTRQELRDCCTIIIWIASALHAALHFGLYSYAGYLPNRPTLS-CNLMPE-PGSVEYEELKTNPDKVFLKTFVPQLQSLLEISIFEVSSRHA 779          
The following BLAST results are available for this feature:
BLAST of FC930825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX1_SOYBN7.220e-6049.56Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX3_PEA1.608e-5949.12Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_HORVU3.583e-5947.35Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX1_ORYSJ1.778e-5846.90Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX3_SOYBN2.323e-5848.67Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX2_ORYSJ3.033e-5846.90Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOX4_ORYSJ3.962e-5847.16Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX3_ORYSJ6.758e-5847.79Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX1_LENCU1.966e-5748.67Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]
LOXB_SOLLC2.568e-5749.12Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]

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Properties
Property NameValue
Genbank descriptionC34109D10EF PostHarvP1 Citrus clementina cDNA clone C34109D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930825 ID=FC930825; Name=FC930825; organism=Citrus clementina; type=EST; length=685bp
GAAATGGAGATCAATGGGTTGGCTCGACAAGCTCTTGTTAATGCTGATGG
AATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCT
CTGTTGCCTATGACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAA
GACCTAATTAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGG
CTTGAAGCTAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATC
TCTGGGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTAC
CCTGATAAAAGCCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGAC
TGAAATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGC
CTGTCTTGAAAACCCCTAAGGATTTAATTGAAATCATCACAACTATTGTT
TGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACACTTA
CGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCA
CTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTTGAAAACCTGAA
AATGCACTTTTGAATACCTTCCCTTCCCAGAATTCAGCTACTAAAGTTAT
GGCTATTCTTTGATGTTTATCGACTCATTCTCCTG
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