FC930825

Overview
NameFC930825
Unique NameFC930825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1852..2536. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.274e-56
Identity = 110/228 (48.25%), Postives = 147/228 (64.47%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPS--DEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLSTHS 681
            M IN LAR +L+NA+G+IE SF P KY++E SS  Y K W F  +ALP DLI R +AV+D S+P+GL+L IEDYP+A DGL++W AIK WV DYV+ YY   + +++D ELQ WW E+   GHGD K +PWWP L+T  +L+E+ T I+W  S  HAAVNFGQY YGG   NRPT +R  +  E  +  DE  K      + A L T   +      ++++  LS H+
Sbjct:  562 MNINALARDSLINANGLIERSFLPSKYAVEMSSAVY-KYWVFTDQALPNDLIKRNMAVKDSSSPYGLRLLIEDYPYAVDGLEIWTAIKTWVQDYVSLYYATDNDIKNDSELQHWWKEVVEKGHGDLKDKPWWPKLQTFDELVEVCTIIIWTASALHAAVNFGQYPYGGLILNRPTLSRRLLPEEGTAEYDEMVK----SSQKAYLRTITPKFQTLIDLSVIEILSRHA 784          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 54/178 (30.34%), Postives = 97/178 (54.49%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +++N +AR  L+N +G+++   S G+  + +        + + +  LP  L +RG+            L I +Y + +DGL +W AI+ +V++ V +YYP  + V+ D ELQAW  EI       ++   +   L TP ++++ +T I++  S  HAAVN GQ+ +G + PN P++ R
Sbjct:  445 LQVNTIARATLLNPEGLVDQVTSIGRQGLIYLMSTGLAHFTYTNFCLPDSLRARGV------------LAIPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEIFAQAFLGRESSGFPSRLCTPGEMVKFLTAIIFNCSAQHAAVNSGQHDFGAWMPNAPSSMR 610          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.739e-21
Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +++N +AR  L+N DG+++   S G+  + +        + +    LP  + +RG+            LTI +Y + +DGL +W AI+++V++ V++YYP  + V+ D ELQAW  EI       ++   +   L TP +L++ +T I++  S  HAA N GQ+ +G + PN P++ R
Sbjct:  445 LQVNTIARATLLNPDGLVDKVTSIGRQGLIYLMSTGLAHFTYTDFCLPDSIRARGV------------LTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEIFAQAFLGRESSGFPSRLCTPGELVKYLTAIIFNCSAQHAAFNSGQHDFGAWMPNAPSSMR 610          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 54/178 (30.34%), Postives = 90/178 (50.56%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI      +++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R
Sbjct:  435 VQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLERESSGFPTCLRTVPELIEYVTMVMYTCSARHAAVNTGQLEYTSWMPNFPSSMR 600          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 68/223 (30.49%), Postives = 109/223 (48.88%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTARCNIATEDPSDEQWKFFL*KPENALLNTFPSQNSATKVMAIL*CLS 672
            + IN LAR+ LV    +I+ S   G            +Q  +    LP+D+ +RG  VED          I  Y + +DG+ +W AIK +V++ V+ YYP  + V+ D+ELQAW  EI + G   ++      +L T + L++ IT +++  S  HAAV+ GQ+    + PN P T +    T             +PE + + T P+ NS++  +  L  LS
Sbjct:  411 LHINTLARELLVAPGKLIDKSTGLGTGGFSDLIKRNMEQLNYSVLCLPEDIRARG--VED----------IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEGFLGRESSGMPSLLDTREALVQYITMVIFTCSAKHAAVSSGQFDSCVWMPNLPPTMQLPPPTSKGQA--------RPE-SFIATLPAVNSSSYHIIALWLLS 612          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 53/178 (29.78%), Postives = 88/178 (49.44%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            ++IN + R  L+N  G+     S G        V    +  +D   LP D + RG  V+D          +  Y + +D L +W+A++++VT+ + +YYP  + VE D ELQ+W  EI       ++   +   L+T  +LI  +T +++  S  HAAVN GQ  +  + PN P + R
Sbjct:  435 VQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLYLPNDFVERG--VQD----------LPGYYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEIFKECLLGRESSGFPRCLRTVPELIRYVTIVIYTCSAKHAAVNTGQMEFTAWMPNFPASMR 600          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 54/178 (30.34%), Postives = 89/178 (50.00%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI       ++   +   L+T  +LIE +T +++  S  HAAVN GQ  Y  + PN P++ R
Sbjct:  435 VQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEIFKECLLGRESSGFPTCLRTIPELIEYVTMVMYTCSARHAAVNSGQLEYTSWMPNFPSSMR 600          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 1
Query:    4 MEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRP 525
            + IN LAR+ L+    +++ S   G            KQ  +    LP+D+ +RG  VED          I  Y + +DG+ +W A++++V++ +  YYP    V+ D ELQAW  EI + G  +++       L+T + L++ +T +++  S  HAAV+ GQ+    + PN P
Sbjct:  410 LHINTLARELLIVPGQVVDRSTGIGIEGFSELIQRNMKQLNYSLLCLPEDIRTRG--VED----------IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKGFLNQESSGIPSSLETREALVQYVTMVIFTCSAKHAAVSAGQFDSCAWMPNLP 571          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX5_RAT (Arachidonate 5-lipoxygenase OS=Rattus norvegicus GN=Alox5 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 46/133 (34.59%), Postives = 73/133 (54.89%), Query Frame = 1
Query:  148 KDLISRGLAVEDPSAPHGLKLTIEDYPF---ANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +DL    L   +     G+  T ED P+    +DGL +W+AI+ + T+ V+ YY D  +VE D+ELQ +  ++   G   +K   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R
Sbjct:  441 QDLTYSSLCFPEAIKARGMDNT-EDIPYYFYRDDGLLVWEAIQSFTTEVVSIYYEDDQVVEEDQELQDFVKDVYVYGMRGRKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 572          
BLAST of FC930825 vs. ExPASy Swiss-Prot
Match: LOX5_MOUSE (Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alox5 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.176e-15
Identity = 46/133 (34.59%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  148 KDLISRGLAVEDPSAPHGLKLTIEDYPF---ANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWPVLKTPKDLIEIITTIVWVTSGHHAAVNFGQYTYGGYFPNRPTTAR 537
            +DL    L   +     G+  T ED PF    +DGL +W+AI+ +  + V+ YY +  +VE D+ELQ +  ++   G   KK   +   +K+ + L E +T +++  S  HAAVNFGQY +  + PN P T R
Sbjct:  442 QDLTYSSLCFPEAIKARGMDST-EDMPFYFYRDDGLLVWEAIQSFTMEVVSIYYENDQVVEEDQELQDFVKDVYVYGMRGKKASGFPKSIKSREKLSEYLTVVIFTASAQHAAVNFGQYDWCSWIPNAPPTMR 573          
The following BLAST results are available for this feature:
BLAST of FC930825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
LOX2_PEA1.274e-5648.25Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOXE3_HUMAN1.019e-2130.34Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LOXE3_MOUSE1.739e-2130.90Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LX12B_RAT4.008e-1830.34Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LX15B_MOUSE5.235e-1830.49Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
LX12B_HUMAN6.836e-1829.78Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LX12B_MOUSE1.166e-1730.34Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]
LX15B_HUMAN2.199e-1629.89Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LOX5_RAT1.091e-1534.59Arachidonate 5-lipoxygenase OS=Rattus norvegicus G... [more]
LOX5_MOUSE3.176e-1534.59Arachidonate 5-lipoxygenase OS=Mus musculus GN=Alo... [more]

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Properties
Property NameValue
Genbank descriptionC34109D10EF PostHarvP1 Citrus clementina cDNA clone C34109D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930825 ID=FC930825; Name=FC930825; organism=Citrus clementina; type=EST; length=685bp
GAAATGGAGATCAATGGGTTGGCTCGACAAGCTCTTGTTAATGCTGATGG
AATCATTGAAAGCTCATTCTCACCTGGAAAGTACTCTATGGAATTCAGCT
CTGTTGCCTATGACAAGCAATGGCGCTTTGACCATGAAGCACTCCCCAAA
GACCTAATTAGCCGGGGATTGGCTGTTGAAGATCCAAGTGCTCCACATGG
CTTGAAGCTAACAATTGAAGACTATCCTTTTGCCAATGATGGCCTTGATC
TCTGGGATGCCATAAAACAATGGGTTACCGATTATGTTAATCACTACTAC
CCTGATAAAAGCCTTGTAGAATCTGATGAAGAGCTCCAAGCTTGGTGGAC
TGAAATTCGAACTGTGGGACACGGTGACAAGAAACATGAACCTTGGTGGC
CTGTCTTGAAAACCCCTAAGGATTTAATTGAAATCATCACAACTATTGTT
TGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACACTTA
CGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCA
CTGAAGATCCATCTGATGAACAATGGAAATTCTTCCTTTGAAAACCTGAA
AATGCACTTTTGAATACCTTCCCTTCCCAGAATTCAGCTACTAAAGTTAT
GGCTATTCTTTGATGTTTATCGACTCATTCTCCTG
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