FC930830
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.854e-45 Identity = 98/211 (46.45%), Postives = 137/211 (64.93%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPS-LKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVA 631 +TDLRS+ V N + A AV++S +K LI DSN L+ I+ + Y+ +S +++ E P CPK LGD+VES +GA+LLDSGFNLN VWK+ML L P+L F+N+ NP+REL ELC + +L P +K G++ + +V +K K I A N + K A + A+Q+ SKLK GY + KSLE IL + K E+ LIGY+E PI+V A Sbjct: 1279 ITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSK--IIICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLEEILIVARKRESELIGYNEDPIDVEA 1487
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL4_ARATH (Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.356e-24 Identity = 75/223 (33.63%), Postives = 107/223 (47.98%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYVPKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISE 670 LTDLRS+ VNN+A ANVAV S +FL +S L E I +Y +++ + EGPRCPK+ +PI+EL+ELC SY D + + KK G F E KV + +SA N ++E + A+Q + + LKA + + LE +LK+ ++EA+LIGY+E PI+VV E L I E Sbjct: 1286 LTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEGPRCPKI------------------------------------------SPIKELIELCQSYKWDREISATKKDGAFTVELKVTKNGCCLTVSATGRN--KREGTKKAAQLMITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILE 1464
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL3A_ORYSJ (Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica GN=DCL3A PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22 Identity = 81/241 (33.61%), Postives = 118/241 (48.96%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTRE--VKEG-PRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAGYV-----PKTKSLESILKSSPKSEARLIGYDETPINVVAADDNVFEKLKISEPQAVNYTLHV 700 LTDLRS VNN+ FA VAV +F+ FL S +L + I YV+ + S + + +G P+ PKVLGD+VES GAILLD+ +L+ VW I L PI+ NL+L P REL+E C + + +G +A V + K+V + + RK+A AS L L+ G + KT+ E S+ + +T + N + IS+P + LHV Sbjct: 1307 LTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQITEYVNRLEGSSMDKVELLSDGLPKGPKVLGDIVESIAGAILLDTKLDLDVVWGIFEPLLSPIVTPENLELPPYRELIEWCGKHGYFVGINCRDQGDTVVATLDVQL--KEVLLVRQGFSKKRKDAKAHASSLLLKDLEEKGLIIPKNASKTEQFEKHCGSTNPFNNLHVDAMDTQTPKPTKEKNAADSRNISDP-LLGKPLHV 1544
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL3B_ORYSJ (Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica GN=DCL3B PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.980e-19 Identity = 61/179 (34.08%), Postives = 93/179 (51.96%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV-DYMITPSSTREVKEGPRC--PKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLKAAG 529 LTDLRS LV+N+ FA V + + L S +L E I YV + E + C PKVLGD++ES GA+ +D+ FN++ VW+I L P++ L L P RELLELC+ L KG + + E + ++D+ + A + ++K A A+ ++ + LK G Sbjct: 1307 LTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYVRSNLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFIDTDFNVDMVWEIFEPLLSPLITPDKLALPPYRELLELCSHIGCFLNSKCTSKGEEVIIEMSLQLRDE--LLVAQGHDRNKKRAKAKAASRILADLKQQG 1483
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_ARATH (Endoribonuclease Dicer homolog OS=Arabidopsis thaliana GN=CAF PE=1 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18 Identity = 59/177 (33.33%), Postives = 87/177 (49.15%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTREVKE----GPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLK 520 LTDLR+ VNN+ FA VAV + +L S+ L + I +V + T SS + PKVLGD+VES GAI LDSG + WK+ L P++ L ++P+REL E C L++ + + G E + D A N +K A ++A++ + LK Sbjct: 1624 LTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFI-----DGVQVGVAQNPQKKMAQKLAARNALAALK 1795
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCL1_ORYSJ (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17 Identity = 59/177 (33.33%), Postives = 91/177 (51.41%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV----DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPSLKKGGKFLAEAKVAVKDKDVFISACATNLSRKEAIRIASQQLFSKLK 520 LTDLR+ VNN+ FA VAV + L S+ L I +V + ++ P + PKVLGD+VES GAI LDSG++ + VWK+ L P++ L ++P+REL E C L++ + + G +A +V V + + A N +K A ++A++ LK Sbjct: 1603 LTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRAGN--IATVEVFVDGVQIGV---AQNPQKKMAQKLAARNALVVLK 1774
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DCR1_DROME (Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.453e-15 Identity = 68/198 (34.34%), Postives = 94/198 (47.47%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYV------------DYMITPSSTREVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDP-ILKFSN-LQLNPIRELLELCNSYDLDLQFPSLKKGGK--FLAEAKVAVKDKDVFISACATNLSRKEAIR--IASQQLFSKLKAAGYVPK 541 LTDLRS LVNN FA++AV F+KF S L++ I+ +V +Y + + E PK LGD+ ES GAI LDS +L+ VW + + + P I +FSN + +PIRELLEL P K GK LA+ + DVF + R I A++ +LK G + K Sbjct: 2059 LTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKSPIRELLEL---------EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQLKKQGLIAK 2247
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_XENTR (Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15 Identity = 48/129 (37.21%), Postives = 73/129 (56.59%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L TVW + + P++ KFS N+ +P+RELLE+ Sbjct: 1703 LTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANVPRSPVRELLEM 1831
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_HUMAN (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15 Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +P+RELLE+ Sbjct: 1732 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1860
BLAST of FC930830 vs. ExPASy Swiss-Prot
Match: DICER_DANRE (Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15 Identity = 48/129 (37.21%), Postives = 74/129 (57.36%), Query Frame = 2 Query: 2 LTDLRSMLVNNQAFANVAVDQSFYKFLIFDSNVLSETINNYVDYMITPSSTR-------------EVKEGPRCPKVLGDLVESSLGAILLDSGFNLNTVWKIMLSFLDPIL-KFS-NLQLNPIRELLEL 343 LTDLRS LVNN FA++AV ++K+ S L I+++V + + + + E +E PK +GD+ ES GAI +DSG +L TVW++ + P++ KFS N+ +P+RELLE+ Sbjct: 1675 LTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 1803 The following BLAST results are available for this feature:
BLAST of FC930830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC930830 ID=FC930830; Name=FC930830; organism=Citrus clementina; type=EST; length=717bpback to top |