FC930832

Overview
NameFC930832
Unique NameFC930832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: RGL3_ARATH (DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.165e-25
Identity = 71/178 (39.89%), Postives = 104/178 (58.43%), Query Frame = 3
Query:  126 PSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPS-KTSLVTPSMLECRL-GEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            PS + +  M   ++ CP  KF    AN AI+EA    + VH+ID  +NQG Q+  L+Q +A  PG  P  RLTGV +P + +    G+Q +G +L  LA+A+GV F+F+ + + + S + P M E R   E LVVN  F+LH +    +S     ++LL  VK++ P LVTVVEQ+ N
Sbjct:  221 PSFEEILQMNF-YDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGVGNPSNRE----GIQELGWKLAQLAQAIGVEFKFNGLTTERLSDLEPDMFETRTESETLVVNSVFELHPV----LSQPGSIEKLLATVKAVKPGLVTVVEQEAN 389          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 71/178 (39.89%), Postives = 101/178 (56.74%), Query Frame = 3
Query:  126 PSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKT-SLVTPSMLECR-LGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            PS + +  M   +E CP  KF    AN AI+EA    +RVH+ID  +NQG Q+  L+Q +A  PG  P  RLTG+  P++       LQ +G +L   A+ +GV FEF  + +++ S + P M E R   E LVVN  F+LH +   S S     ++LL  VK++ P +VTVVEQ+ N
Sbjct:  248 PSFEEVLEMHF-YESCPYLKFAHFTANQAILEAVTTARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENS--DSLQQLGWKLAQFAQNMGVEFEFKGLAAESLSDLEPEMFETRPESETLVVNSVFELHRLLARSGSI----EKLLNTVKAIKPSIVTVVEQEAN 418          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: GAIP_CUCMA (DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 71/173 (41.04%), Postives = 100/173 (57.80%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  LIQ +A  P   P  RLTG+  P         LQ +G +L   AE L V FE+   V +  + +  SMLE R    E++VVN  F+LH +    ++     +++L +VK + P++VTVVEQ+ N   P F
Sbjct:  285 YESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGIQWPALIQALALRPSGPPTFRLTGIGPPAPDNS--DYLQDVGWKLVKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQL----LARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVF 451          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/167 (38.92%), Postives = 97/167 (58.08%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            +E CP  KF    AN AI+EAF G  +VH+IDF + QG Q+  L+Q +A  PG  P  RLTG+  P+        LQ +G +L  LAE +GV FEF   V +  + +  ++L+ R    EA+ +N  F+LH +    +S     +++L  +K +NPK+VT+VEQ+ N
Sbjct:  273 YETCPYLKFAHFTANQAILEAFTGCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDN--TDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLDATILDIRPSETEAVAINSVFELHRL----LSRPGAIEKVLNSIKQINPKIVTLVEQEAN 433          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24
Identity = 69/187 (36.90%), Postives = 103/187 (55.08%), Query Frame = 3
Query:  120 EPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +P  +D+L      +E CP  KF    AN AI+EAF    RVH+IDF + QG Q+  L+Q +A  PG  P  RLTG+  P+        LQ +G +L  LAE +G+ FEF   V +  + + P ML+ R    E + VN  F+LH +    ++     ++++  +K++ PK+VTVVEQ+ N   P F
Sbjct:  233 DPSYNDKLQIP--FYETCPYLKFAHFTANQAILEAFSMASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDN--TDALQQVGWKLAQLAERIGIEFEFRGFVANSLADLEPEMLDIRPPEIEVVAVNAVFELHPL----LARPGGIEKVVSSIKAMKPKIVTVVEQEANHNGPVF 411          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR_MAIZE (Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.022e-24
Identity = 71/171 (41.52%), Postives = 94/171 (54.97%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRD-QLLRMVKSLNPKLVTVVEQDMN 653
            AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+         +  L+  G RL   A+ LG+PFEF AV  K   V P  L     EA+ V++   LHH    S+  V   D   L +++ L PK+VT+VEQD++
Sbjct:  378 AAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG------ASMEALEATGKRLSDFADTLGLPFEFCAVAEKAGNVDPEKLGVTRREAVAVHW---LHH----SLYDVTGSDSNTLWLIQRLAPKVVTMVEQDLS 535          

HSP 2 Score: 25.7942 bits (55), Expect = 4.022e-24
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+ +S
Sbjct:  333 GTSTQRVAAYFAEAMSARLVSS 354          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: GAI_ARATH (DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 68/173 (39.31%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKT-SLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +E CP  KF    AN AI+EAF+G+KRVH+IDF ++QG Q+  L+Q +A  PG  P  RLTG+  P         L  +G +L  LAEA+ V FE+    + T + +  SMLE R    E++ VN  F+LH +    +      D++L +V  + P++ TVVEQ+ N   P F
Sbjct:  244 YETCPYLKFAHFTANQAILEAFQGKKRVHVIDFSMSQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDN--FDYLHEVGCKLAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKL----LGRPGAIDKVLGVVNQIKPEIFTVVEQESNHNSPIF 410          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: GAIPB_CUCMA (DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 71/191 (37.17%), Postives = 106/191 (55.50%), Query Frame = 3
Query:  114 CKEPPSSDRLAAMQIL--FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            C E P    ++ M  L  +E  P  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A  P   P  RLTG+  P         LQ +G +L  L E + V FE+   V +  + +  SMLE R    E++VVN  F+LH +    ++     ++++ +VK + P+++TVVEQ+ N   P F
Sbjct:  274 CPENPLDHSMSDMLQLHFYESSPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALLQALALRPSGPPAFRLTGIGPPAPDNS--DYLQDVGWKLAKLVETINVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKL----LARPGAIEKVMSVVKQMKPEIMTVVEQEANHNGPVF 458          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: RGA1_BRACM (DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 68/173 (39.31%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A   G  P  RLTG+  P +       L  +G +L  LAEA+ V FE+   V +  + +  SMLE R    EA+ VN  F+LH +    +      +++  +VK + P + TVVEQ+ N   P F
Sbjct:  283 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPSFRLTGIGPPAADNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSETEAVAVNSVFELHKL----LGRTGGIEKVFGVVKQIKPVIFTVVEQESNHNGPVF 449          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: RGA_ARATH (DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 69/173 (39.88%), Postives = 97/173 (56.07%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A   G  P  RLTG+  P         L  +G +L  LAEA+ V FE+   V +  + +  SMLE R    EA+ VN  F+LH +    +      +++L +VK + P + TVVEQ+ N   P F
Sbjct:  296 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPTFRLTGIGPPAPDNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKL----LGRPGGIEKVLGVVKQIKPVIFTVVEQESNHNGPVF 462          
The following BLAST results are available for this feature:
BLAST of FC930832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RGL3_ARATH2.165e-2539.89DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3... [more]
RGL2_ARATH2.828e-2539.89DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
GAIP_CUCMA2.828e-2541.04DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=... [more]
GAI_SOLLC3.693e-2538.92DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
GAI_GOSHI1.403e-2436.90DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
SCR_MAIZE4.022e-2441.52Protein SCARECROW OS=Zea mays GN=SCR PE=2 SV=1[more]
GAI_ARATH4.083e-2439.31DELLA protein GAI OS=Arabidopsis thaliana GN=GAI P... [more]
GAIPB_CUCMA4.083e-2437.17DELLA protein GAIP-B OS=Cucurbita maxima GN=GAIPB ... [more]
RGA1_BRACM5.333e-2439.31DELLA protein RGA1 OS=Brassica campestris GN=RGA1 ... [more]
RGA_ARATH6.965e-2439.88DELLA protein RGA OS=Arabidopsis thaliana GN=RGA P... [more]

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Properties
Property NameValue
Genbank descriptionC34109E06EF PostHarvP1 Citrus clementina cDNA clone C34109E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930832 ID=FC930832; Name=FC930832; organism=Citrus clementina; type=EST; length=723bp
CCGGCAGATGGTCTCAATTCAAGGAGATCCTCCTCAGAGGATTGCAGCTT
ACATGGTGGAAGGTCTTGCAGCTCGCATGGCTGCCTCTGGCAAGTTTCTC
TAAAGCTCTAAAATGCAAAGAGCCCCCTTCTTCTGACAGACTAGCAGCAA
TGCAGATCCTCTTTGAGGTGTGTCCTTGTTTTAAATTTGGATTTATGGCA
GCAAATGGTGCAATTATAGAGGCATTTAAAGGTGAAAAGAGAGTACATAT
AATAGATTTTGACATAAATCAAGGTAGTCAATATATAACACTGATACAAA
CAATTGCTTCTCTGCCTGGTAATCGACCTCACTTGAGGTTAACTGGGGTT
GATGATCCAGAGTCAGTTCAACGTCTGGTAGGTGGCCTTCAAATTATTGG
GCTAAGACTTGAGAGTCTAGCAGAAGCGCTTGGAGTGCCATTTGAGTTTC
ATGCAGTGCCCTCAAAGACTTCGCTTGTTACACCATCAATGCTGGAGTGC
AGGCTTGGGGAAGCACTTGTAGTGAACTTTGCTTTCCAGCTTCACCACAT
GCCCGATGAGAGTGTTTCAACAGTAAACCAGAGAGACCAGCTACTCAGGA
TGGTTAAGAGCTTGAATCCAAAGCTTGTAACTGTTGTTGAACAAGATATG
AACACAACACTTCCCCATTTTTCCCAGGTTTATTGAAGCTACATTACTAT
TCTGTGTGTTGAGTCTCTGATGC
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