FC930832

Overview
NameFC930832
Unique NameFC930832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: RGA2_BRACM (DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 68/173 (39.31%), Postives = 98/173 (56.65%), Query Frame = 3
Query:  162 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHA-VPSKTSLVTPSMLECRLG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            +E CP  KF    AN AI+EAF+G+KRVH+IDF +NQG Q+  L+Q +A   G  P  RLTG+  P +       L  +G +L  LAEA+ V FE+   V +  + +  SMLE R    EA+ VN  F+LH +    +      +++L +VK + P + TVVEQ+ +   P F
Sbjct:  289 YETCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGLQWPALMQALALREGGPPVFRLTGIGPPAADNS--DHLHEVGCKLAQLAEAIHVEFEYRGFVANSLADLDASMLELRPSEIEAVAVNSVFELHKL----LGRTGGIEKVLGVVKQIKPVIFTVVEQESSHNGPVF 455          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.896e-23
Identity = 63/190 (33.16%), Postives = 99/190 (52.11%), Query Frame = 3
Query:  105 ALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIA-SLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            AL  K+  ++D L A Q    VCP  K   + AN +++        +HIIDF I+ G Q+  LI  ++ S PG  P LR+TG++ P+   R   G+Q  G RL    +   VPFE++A+  K   +    L+ R GE +VVN  F+  ++ DE+V   + RD +L++++ +NP +        N   P F
Sbjct:  455 ALSSKKTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFF 644          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSJ (Protein SCARECROW 2 OS=Oryza sativa subsp. japonica GN=SCR2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.475e-23
Identity = 67/170 (39.41%), Postives = 92/170 (54.12%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+         +  L+  G RL   A+ LG+PFEF  V  K   + P  L     EA+ V++    H + D + S  N     L +++ L PK+VT+VEQD++
Sbjct:  371 AAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG------ASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLS 528          

HSP 2 Score: 25.7942 bits (55), Expect = 9.475e-23
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+ +S
Sbjct:  326 GTSTQRVAAYFAEAMSARLVSS 347          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR2_ORYSI (Protein SCARECROW 2 OS=Oryza sativa subsp. indica GN=SCR2 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.475e-23
Identity = 67/170 (39.41%), Postives = 92/170 (54.12%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+         +  L+  G RL   A+ LG+PFEF  V  K   + P  L     EA+ V++    H + D + S  N     L +++ L PK+VT+VEQD++
Sbjct:  371 AAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG------ASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLS 528          

HSP 2 Score: 25.7942 bits (55), Expect = 9.475e-23
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+ +S
Sbjct:  326 GTSTQRVAAYFAEAMSARLVSS 347          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSI (Protein SCARECROW 1 OS=Oryza sativa subsp. indica GN=SCR1 PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.475e-23
Identity = 67/170 (39.41%), Postives = 92/170 (54.12%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+         +  L+  G RL   A+ LG+PFEF  V  K   + P  L     EA+ V++    H + D + S  N     L +++ L PK+VT+VEQD++
Sbjct:  370 AAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG------ASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLS 527          

HSP 2 Score: 25.7942 bits (55), Expect = 9.475e-23
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+ +S
Sbjct:  325 GTSTQRVAAYFAEAMSARLVSS 346          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR1_ORYSJ (Protein SCARECROW 1 OS=Oryza sativa subsp. japonica GN=SCR1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.477e-23
Identity = 67/170 (39.41%), Postives = 92/170 (54.12%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            AA Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P +RLTG+         +  L+  G RL   A+ LG+PFEF  V  K   + P  L     EA+ V++    H + D + S  N     L +++ L PK+VT+VEQD++
Sbjct:  362 AAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG------ASMEALEATGKRLSDFADTLGLPFEFCPVADKAGNLDPEKLGVTRREAVAVHWL--RHSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLS 519          

HSP 2 Score: 25.7942 bits (55), Expect = 9.477e-23
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+ +S
Sbjct:  317 GTSTQRVAAYFAEAMSARLVSS 338          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.495e-23
Identity = 61/190 (32.11%), Postives = 100/190 (52.63%), Query Frame = 3
Query:   87 LASFSKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRP-HLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            L+  S A       + D + + + L + CP  KF  + AN AI+EA +   ++HI+DF I QG Q+  L+Q +A+    +P  +R++G+  P   +     L   G RL   A+ L + F+F  + +   L+  S       E L VNF  QL+ + DE+ + V   D  LR+ KSLNP++VT+ E +++
Sbjct:  268 LSPNSPATSSSSSSTEDLILSYKTLNDACPYSKFAHLTANQAILEATEKSNKIHIVDFGIVQGIQWPALLQALATRTSGKPTQIRVSGIPAPSLGESPEPSLIATGNRLRDFAKVLDLNFDFIPILTPIHLLNGSSFRVDPDEVLAVNFMLQLYKLLDETPTIV---DTALRLAKSLNPRVVTLGEYEVS 454          

HSP 2 Score: 28.4906 bits (62), Expect = 9.495e-23
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 2
Query:    2 RQMVSIQGDPPQRIAAYMVEGLAARMA 82
            R+ VS  GDP +R+A Y  E L+ R++
Sbjct:  243 RESVSELGDPTERVAFYFTEALSNRLS 269          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL26_ARATH (Scarecrow-like protein 26 OS=Arabidopsis thaliana GN=SCL26 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 60/175 (34.29%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  132 SDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIAS--LPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDM 650
            +D ++A ++L  + P   FG++ A  AI+EA K E+R+HI+D+DIN+G Q+ +L+Q + S     +  HLR+T +    + ++ V  +Q  G RL + A+++G PF +      T+  + S L+   GEA+V+N    + H+P  S  T +     L   K+LNPKLVT+V +++
Sbjct:  178 ADVISAFELLQNMSPYVNFGYLTATQAILEAVKYERRIHIVDYDINEGVQWASLMQALVSRNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFADSIGQPFSYQHCKLDTNAFSTSSLKLVRGEAVVINC---MLHLPRFSHQTPSSVISFLSEAKTLNPKLVTLVHEEV 349          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.598e-22
Identity = 71/193 (36.79%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   75 AWLPLASFSKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            A LP++S +       P +    +A Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P++RLTG+            L+  G RL   A  LG+PFEF  V  K   +    L     EA+ V++    H + D + S  N     L +++ L PK+VTVVEQD++
Sbjct:  508 ATLPVSSHT-------PHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGTSMET------LEATGKRLSDFANKLGLPFEFFPVAEKVGNIDVEKLNVSKSEAVAVHWL--QHSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS 681          

HSP 2 Score: 25.0238 bits (53), Expect = 1.598e-22
Identity = 10/22 (45.45%), Postives = 15/22 (68.18%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+ +S
Sbjct:  481 GTSAQRVAAYFSEAISARLVSS 502          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCR_IPONI (Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.521e-22
Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            +A Q+   + P  KF    AN AI EAF+ E RVHIID DI QG Q+  L   +AS PG  P +RLTG+         +  L+  G RL   A+ LG+PFEF  V  K   + P  L     EA+ V++    H + D + S  N     L +++ L PK+VTVVEQD++
Sbjct:  495 SAFQVFNGISPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGTS------MEALEATGKRLSDFAQKLGLPFEFFPVADKVGNLDPQRLNVNKREAVAVHWL--QHSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS 652          

HSP 2 Score: 23.8682 bits (50), Expect = 3.521e-22
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 2
Query:   23 GDPPQRIAAYMVEGLAARMAAS 88
            G   QR+AAY  E ++AR+  S
Sbjct:  451 GTSAQRVAAYFSEAMSARLVNS 472          
The following BLAST results are available for this feature:
BLAST of FC930832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
RGA2_BRACM1.188e-2339.31DELLA protein RGA2 OS=Brassica campestris GN=RGA2 ... [more]
SCL14_ARATH5.896e-2333.16Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCR2_ORYSJ9.475e-2339.41Protein SCARECROW 2 OS=Oryza sativa subsp. japonic... [more]
SCR2_ORYSI9.475e-2339.41Protein SCARECROW 2 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSI9.475e-2339.41Protein SCARECROW 1 OS=Oryza sativa subsp. indica ... [more]
SCR1_ORYSJ9.477e-2339.41Protein SCARECROW 1 OS=Oryza sativa subsp. japonic... [more]
SCL4_ARATH9.495e-2332.11Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
SCL26_ARATH1.006e-2234.29Scarecrow-like protein 26 OS=Arabidopsis thaliana ... [more]
SCR_PEA1.598e-2236.79Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]
SCR_IPONI3.521e-2239.41Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34109E06EF PostHarvP1 Citrus clementina cDNA clone C34109E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930832 ID=FC930832; Name=FC930832; organism=Citrus clementina; type=EST; length=723bp
CCGGCAGATGGTCTCAATTCAAGGAGATCCTCCTCAGAGGATTGCAGCTT
ACATGGTGGAAGGTCTTGCAGCTCGCATGGCTGCCTCTGGCAAGTTTCTC
TAAAGCTCTAAAATGCAAAGAGCCCCCTTCTTCTGACAGACTAGCAGCAA
TGCAGATCCTCTTTGAGGTGTGTCCTTGTTTTAAATTTGGATTTATGGCA
GCAAATGGTGCAATTATAGAGGCATTTAAAGGTGAAAAGAGAGTACATAT
AATAGATTTTGACATAAATCAAGGTAGTCAATATATAACACTGATACAAA
CAATTGCTTCTCTGCCTGGTAATCGACCTCACTTGAGGTTAACTGGGGTT
GATGATCCAGAGTCAGTTCAACGTCTGGTAGGTGGCCTTCAAATTATTGG
GCTAAGACTTGAGAGTCTAGCAGAAGCGCTTGGAGTGCCATTTGAGTTTC
ATGCAGTGCCCTCAAAGACTTCGCTTGTTACACCATCAATGCTGGAGTGC
AGGCTTGGGGAAGCACTTGTAGTGAACTTTGCTTTCCAGCTTCACCACAT
GCCCGATGAGAGTGTTTCAACAGTAAACCAGAGAGACCAGCTACTCAGGA
TGGTTAAGAGCTTGAATCCAAAGCTTGTAACTGTTGTTGAACAAGATATG
AACACAACACTTCCCCATTTTTCCCAGGTTTATTGAAGCTACATTACTAT
TCTGTGTGTTGAGTCTCTGATGC
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