FC930832

Overview
NameFC930832
Unique NameFC930832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.359e-19
Identity = 61/171 (35.67%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  144 AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKT-SLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN 653
            +A+Q    V P  KF    AN AI +A  GE  VHIID D+ QG Q+  L   +AS P     +R+TG      +      L   G RL   A +L +PFEFH +     +L+ PS L  R GEA+VV      H M            + L +++ L P L+TVVEQ+++
Sbjct:  119 SALQTYNSVSPLIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGSSSDL------LASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVV------HWMQHRLYDVTGNNLETLEILRRLKPNLITVVEQELS 277          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 64/203 (31.53%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  147 AMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN-----------TTLPHFSQVY*SYITILCVESLM 722
            A++ L +V P  KF    AN  ++ AF+G++RVHIIDFDI QG Q+ +  Q++AS      H+R+TG+ + +        L   G RL   AEA+ + FEFH V  +   V   ML  + GE++ VN   Q+H    +      +    L +++S NP  + + EQ+              +L ++S ++ +  T L  +SLM
Sbjct:  354 ALRFLNQVTPIPKFIHFTANEMLLRAFEGKERVHIIDFDIKQGLQWPSFFQSLASRINPPHHVRITGIGESKL------ELNETGDRLHGFAEAMNLQFEFHPVVDRLEDVRLWMLHVKEGESVAVNCVMQMHKTLYDGTGAAIR--DFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLM 548          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.918e-18
Identity = 57/179 (31.84%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  135 DRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLPHF 671
            D L A +   + CP     +  AN  I E       +HIIDF I  G Q+  LIQ ++      P LR+TG++ P+S  R    ++  G RL+   +   VPFE+  +      +T   L    GE  VVN   +L + PDE+VS  + RD  L++ + +NP L    E +     P F
Sbjct:  280 DILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFF 458          

HSP 2 Score: 21.9422 bits (45), Expect = 5.918e-18
Identity = 10/29 (34.48%), Postives = 15/29 (51.72%), Query Frame = 2
Query:    2 RQMVSIQGDPPQRIAAYMVEGLAARMAAS 88
            R+  S  GD  QR+  +  E L AR+  +
Sbjct:  236 REHSSRHGDATQRLGYHFAEALEARITGT 264          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 56/175 (32.00%), Postives = 89/175 (50.86%), Query Frame = 3
Query:  102 KALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKL 626
            K +  K   ++  L A Q+    CP  K  +   N  I +     +RVH+IDF I  G Q+ TLI    S+ G+ P +R+TG++ P+   R    ++  G RL + A+  GVPFE+ A+  K   +    L+    E  VVN  ++  ++ DESV   + RD +L ++  +NP L
Sbjct:  405 KGIVSKPRSAAAVLKAHQLFLACCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRF-SMYGS-PKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDL 577          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SHR_ARATH (Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.834e-17
Identity = 57/170 (33.53%), Postives = 93/170 (54.71%), Query Frame = 3
Query:  165 EVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTG-------VDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSM--LECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQD 647
            EV P   FG +AANGAI+EA  GE ++HI+D      +Q+ TL++ +A+   + PHLRLT        V+D  +  R+   ++ IG R+E  A  +GVPF+F+ +     L    +  L+ +  E L +N    +H +     S  + RD ++   + L P++VTVVE++
Sbjct:  230 EVSPWATFGHVAANGAILEAVDGEAKIHIVDISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRM---MKEIGNRMEKFARLMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGI----ASRGSPRDAVISSFRRLRPRIVTVVEEE 392          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL32_ARATH (Scarecrow-like protein 32 OS=Arabidopsis thaliana GN=SCL32 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 62/193 (32.12%), Postives = 100/193 (51.81%), Query Frame = 3
Query:  126 PSSDRLAAMQIL-----FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIAS-LPGNRPHLRLTGVDDPESVQRLVG-GLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLE------CRLGEALVVNFAFQLHHMPDESV--STVNQRDQLLRMVKSLNPKLVTVVEQDMNTT 659
            P +D L    ++      ++ P  +FGF+AAN AI+ A +G   VHI+D  +    Q  TLI  +AS L    P L+LT V   +     +    + +G +L + A    +  EF  VPS  S    S+L+          EALVVN    L ++P+E +  S+ + R   L+ ++SLNP++VT++E+D++ T
Sbjct:   94 PQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCMQIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITMEFTIVPSTYSDGFSSLLQQLRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQLRSLNPRIVTLIEEDVDLT 286          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSI (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica GN=SHR1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.116e-15
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  165 EVCPCFKFGFMAANGAIIEAF--------KGEKRVHIIDFDINQGSQYITLIQTIASLPGNR-PHLRLTGV------DDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSM--LECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQD 647
            E+ P   FG +AANGAI+E+F           +R HI+D      +Q+ TL++ +A+   +  PHL +T V          +VQR+   ++ IG R+E  A  +GVPF F AV     L    +  L+ R G A        ++ +         +RD     ++ L+P++VTVVE++
Sbjct:  277 ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRV---MREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEE 451          

HSP 2 Score: 31.9574 bits (71), Expect = 9.116e-15
Identity = 13/30 (43.33%), Postives = 22/30 (73.33%), Query Frame = 2
Query:    5 QMVSIQGDPPQRIAAYMVEGLAARMAASGK 94
            ++ S  GD  Q++A+Y ++GL AR+ ASG+
Sbjct:  220 ELASPYGDVEQKLASYFLQGLFARLTASGQ 249          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SHR1_ORYSJ (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica GN=SHR1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.184e-14
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  165 EVCPCFKFGFMAANGAIIEAF--------KGEKRVHIIDFDINQGSQYITLIQTIASLPGNR-PHLRLTGV------DDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSM--LECRLGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQD 647
            E+ P   FG +AANGAI+E+F           +R HI+D      +Q+ TL++ +A+   +  PHL +T V          +VQR+   ++ IG R+E  A  +GVPF F AV     L    +  L+ R G A        ++ +         +RD     ++ L+P++VTVVE++
Sbjct:  277 ELSPWSSFGHVAANGAILESFLEVAAAASSETQRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRV---MREIGQRMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRARRRDAFAASLRRLDPRVVTVVEEE 451          

HSP 2 Score: 31.5722 bits (70), Expect = 1.184e-14
Identity = 13/29 (44.83%), Postives = 21/29 (72.41%), Query Frame = 2
Query:    5 QMVSIQGDPPQRIAAYMVEGLAARMAASG 91
            ++ S  GD  Q++A+Y ++GL AR+ ASG
Sbjct:  220 ELASPYGDVEQKLASYFLQGLFARLTASG 248          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SCL18_ARATH (Scarecrow-like protein 18 OS=Arabidopsis thaliana GN=SCL18 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.246e-14
Identity = 62/198 (31.31%), Postives = 98/198 (49.49%), Query Frame = 3
Query:  159 LFEVCPCFKFGFMAANGAIIEAFKGEKR--VHIIDFDINQGSQYITLIQTIASLPGN----RPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRL-------GEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMN----TTLPHFSQVY*SYITI 701
            L ++ P  +FG + AN AI++A +      +HI+D DI+QG Q+  L+Q +A    N     P LR+TG        R V GL   G RL   A++LG+ F+FH +      +   +L+ RL       GE + VN    LH + ++    +      L  +KSLN ++VT+ E++ N    + L  FS+    Y+ I
Sbjct:  149 LNQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSNPSSPPPSLRITGCG------RDVTGLNRTGDRLTRFADSLGLQFQFHTLVIVEEDLAGLLLQIRLLALSAVQGETIAVNCVHFLHKIFNDDGDMIG---HFLSAIKSLNSRIVTMAEREANHGDHSFLNRFSEAVDHYMAI 337          
BLAST of FC930832 vs. ExPASy Swiss-Prot
Match: SHR2_ORYSJ (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica GN=SHR2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.552e-13
Identity = 58/195 (29.74%), Postives = 86/195 (44.10%), Query Frame = 3
Query:  165 EVCPCFKFGFMAANGAIIEAF-------------------KGEKRVHIIDFDINQGSQYITLIQTIASLPGN-RPHLRLTGVDD---PESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRLGE-----ALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTTLP 665
            E+ P   FG +AANGAI+E+F                       R+HI+D      +Q+ TL++ +A+   +  PHL +T V     P +  + V  ++ IG RLE  A  +GVPF F AV     L    +    L E     AL VN    L             RD  +  ++ L P++VTVVE++ +   P
Sbjct:  273 ELSPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAPSAAAQRV--MREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNCVNALR-------GVARGRDAFVASLRRLEPRVVTVVEEEADLAAP 458          

HSP 2 Score: 30.0314 bits (66), Expect = 3.552e-13
Identity = 12/29 (41.38%), Postives = 20/29 (68.97%), Query Frame = 2
Query:    5 QMVSIQGDPPQRIAAYMVEGLAARMAASG 91
            ++ S  GD  Q++A+Y ++GL AR+  SG
Sbjct:  216 ELASPYGDVDQKLASYFLQGLFARLTTSG 244          
The following BLAST results are available for this feature:
BLAST of FC930832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
SCL23_ARATH1.359e-1935.67Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]
SCL28_ARATH2.319e-1931.53Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
SCL30_ARATH5.918e-1831.84Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH2.170e-1732.00Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SHR_ARATH2.834e-1733.53Protein SHORT-ROOT OS=Arabidopsis thaliana GN=SHR ... [more]
SCL32_ARATH6.314e-1732.12Scarecrow-like protein 32 OS=Arabidopsis thaliana ... [more]
SHR1_ORYSI9.116e-1530.34Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica... [more]
SHR1_ORYSJ1.184e-1430.34Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japoni... [more]
SCL18_ARATH2.246e-1431.31Scarecrow-like protein 18 OS=Arabidopsis thaliana ... [more]
SHR2_ORYSJ3.552e-1329.74Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionC34109E06EF PostHarvP1 Citrus clementina cDNA clone C34109E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930832 ID=FC930832; Name=FC930832; organism=Citrus clementina; type=EST; length=723bp
CCGGCAGATGGTCTCAATTCAAGGAGATCCTCCTCAGAGGATTGCAGCTT
ACATGGTGGAAGGTCTTGCAGCTCGCATGGCTGCCTCTGGCAAGTTTCTC
TAAAGCTCTAAAATGCAAAGAGCCCCCTTCTTCTGACAGACTAGCAGCAA
TGCAGATCCTCTTTGAGGTGTGTCCTTGTTTTAAATTTGGATTTATGGCA
GCAAATGGTGCAATTATAGAGGCATTTAAAGGTGAAAAGAGAGTACATAT
AATAGATTTTGACATAAATCAAGGTAGTCAATATATAACACTGATACAAA
CAATTGCTTCTCTGCCTGGTAATCGACCTCACTTGAGGTTAACTGGGGTT
GATGATCCAGAGTCAGTTCAACGTCTGGTAGGTGGCCTTCAAATTATTGG
GCTAAGACTTGAGAGTCTAGCAGAAGCGCTTGGAGTGCCATTTGAGTTTC
ATGCAGTGCCCTCAAAGACTTCGCTTGTTACACCATCAATGCTGGAGTGC
AGGCTTGGGGAAGCACTTGTAGTGAACTTTGCTTTCCAGCTTCACCACAT
GCCCGATGAGAGTGTTTCAACAGTAAACCAGAGAGACCAGCTACTCAGGA
TGGTTAAGAGCTTGAATCCAAAGCTTGTAACTGTTGTTGAACAAGATATG
AACACAACACTTCCCCATTTTTCCCAGGTTTATTGAAGCTACATTACTAT
TCTGTGTGTTGAGTCTCTGATGC
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