FC930835

Overview
NameFC930835
Unique NameFC930835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_YERPB (Anthranilate phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  221 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYH 670
            L + L     +++ E+Q     ++  E + + ++A L+ ++ +GET  EI G A+A++  A           DIVGTGGDG N++NIST ++ +AA+CG KVAK             D+L A G+ +D+  E  R  +D+ G+ F+ + +YH
Sbjct:    4 LFEKLFRAESMSQEESQQLFAAIVRGELEPSQLAAVLISMKVRGETPAEIAGAAQALLADAQHFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGVKVAKHGNRSVSSRSGSSDLLAAFGIRLDMSAEQSRLALDDLGVCFLFAPQYH 155          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_YERPA (Anthranilate phosphoribosyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  221 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYH 670
            L + L     +++ E+Q     ++  E + + ++A L+ ++ +GET  EI G A+A++  A           DIVGTGGDG N++NIST ++ +AA+CG KVAK             D+L A G+ +D+  E  R  +D+ G+ F+ + +YH
Sbjct:    4 LFEKLFRAESMSQEESQQLFAAIVRGELEPSQLAAVLISMKVRGETPAEIAGAAQALLADAQHFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGVKVAKHGNRSVSSRSGSSDLLAAFGIRLDMSAEQSRLALDDLGVCFLFAPQYH 155          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_YERP3 (Anthranilate phosphoribosyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 50/152 (32.89%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  221 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYH 670
            L + L     +++ E+Q     ++  E + + ++A L+ ++ +GET  EI G A+A++  A           DIVGTGGDG N++NIST ++ +AA+CG KVAK             D+L A G+ +D+  E  R  +D+ G+ F+ + +YH
Sbjct:    5 LFEKLFRAESMSQEESQQLFAAIVRGELEPSQLAAVLISMKVRGETPAEIAGAAQALLADAQHFPRPDYLFADIVGTGGDGTNSINISTASAFVAASCGVKVAKHGNRSVSSRSGSSDLLAAFGIRLDMSAEQSRLALDDLGVCFLFAPQYH 156          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PROMM (Anthranilate phosphoribosyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  212 FNELIDCLISRVDLTEAEAQASLD-YLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA--VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCM 679
            ++++++ L+   +L E EA A ++ +L  +       AFL  LRAKG T  E+ G+A+ +         L D   VD  GTGGDGA+T NIST  +  AAACGA VAK             DVLE LG+ +      V   + E G+ F+ +  +HP +
Sbjct:   11 WSQILEMLLEGQNLPEVEATALMEAWLAEQLTPVQTGAFLAALRAKGVTGNELSGMAQVLRGACPLPCPLPDIPMVDTCGTGGDGADTFNISTAVAFTAAACGANVAKHGNRSASGKVGSADVLEGLGLQLKAPLVSVVEALVEVGVTFLFAPAWHPAL 169          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PHOLL (Anthranilate phosphoribosyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAV-DIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYH 670
            L +   LT+ E+Q     ++  E  E  ++A L+ ++ +GE   EI G A+A++  A           DIVGTGGDGAN++NIST ++ +A+AC  K+AK             D+L A G+ +D+  E  R  +DE GI F+ +  YH
Sbjct:    8 LFNAQTLTQQESQQLFAAIIQGELSEPQLAAVLISMKLRGEQPQEIAGAAQALLANALPFPRPDYTFCDIVGTGGDGANSINISTASAFVASACQIKIAKHGNRSVSSQSGSSDLLAAFGIALDISAECARSALDEIGICFLFAPHYH 155          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_FRATO (Anthranilate phosphoribosyltransferase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=trpD PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 53/159 (33.33%), Postives = 85/159 (53.46%), Query Frame = 2
Query:  221 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFVR 691
            ++D L +  DL+  E+    DY +  + +  L ++ L+ L+ K ET  EI     A+     +   + GD   IVGTGGDG NT+NIST A+I+AA  G KVAK             D+LE+ GV I+L P+  ++C++   +GF+ +  Y    + ++
Sbjct:    7 IVDKLYNLEDLSYQESYQLFDYFIKGQIELPLQTSILIALKLKKETSIEIAAAVEALFDNTKEFPKIKGDLAGIVGTGGDGFNTINISTTAAIVAATAGYKVAKHGGRSVSSKSGSFDLLESFGVNIELAPDQTKQCLELYNLGFLFAPFYSDGFRHIK 165          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_CLAMS (Anthranilate phosphoribosyltransferase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  197 PLTPCFNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTV-NISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 673
            P  P +  LI  LI    L+ +E+  ++  ++  EA  A +   LV LRA GET  EIVG   A+++ A  ++    A+DIVGTGGD    V NIS+ ASI+AA+ G  V K             DVL ALG+ + + PE V   + E GI +  +  +HP
Sbjct:    2 PSAPTWPALITTLIEGRHLSVSESTWAMRQVMRGEATPAQLGGLLVALRASGETVDEIVGFRDAVLEDALPLDADPRALDIVGTGGDPYGAVLNISSAASIVAASTGVPVIKHGNRGASSASGASDVLTALGIDLTIAPERVAAVLRETGITYAHAALFHP 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPG_THEMA (Anthranilate synthase component II OS=Thermotoga maritima GN=trpGD PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            L+   DLT  E++  ++++++  A +A I+ FLV LR K ET  E+ G+A  M + +  ++      VD  GTGGDG  T NIST  + + AA G  VAK             DVLEA G  ++  PE + R + E G  F+ +   HP MK V
Sbjct:  257 LVEFEDLTFEESRQVMNFIMSGNATDAQIAGFLVALRMKEETGDELGGMASVMREKSIHIKAPSPRTVDTCGTGGDGFGTFNISTTTAFVVAAAGIPVAKHGNRSVSSKVGSADVLEAGGYKLEKTPEEMERELKETGFSFLFAPLLHPAMKHV 410          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPG_ECOLI (Anthranilate synthase component II OS=Escherichia coli (strain K12) GN=trpD PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 47/120 (39.17%), Postives = 72/120 (60.00%), Query Frame = 2
Query:  314 ISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYH 670
            ++A LV ++ +GE   EI G A A+++ A           DIVGTGGDG+N++NIST ++ +AAACG KVAK             D+L A G+ +D++ +  R+ +DE G+ F+ + KYH
Sbjct:  235 LAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDELGVCFLFAPKYH 354          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PELLD (Anthranilate phosphoribosyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=trpD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.508e-17
Identity = 56/159 (35.22%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  218 ELIDCLISRVDLTEAEAQASLDYLLNE--ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            EL++ L +   LT  E +  +D ++    ++EA+I A L L++  G T   + G   ++++ AT ++    AVD  GTGGD A T NIST A+I+A A G  +AK             DVLE LG  I+L PE         G  ++ +  YHP MK V
Sbjct:    5 ELLEKLQAGQQLTYDETKRCMDGIMAGLFSEEAII-ALLTLMQDNGITADAVAGARESIMQRATPIQLDERAVDTCGTGGDSAGTFNISTAAAIIANAAGVSIAKHGNRAVTSRCGSADVLEELGFCIELPPEATEELYGRTGFAYLHAPLYHPSMKAV 162          
The following BLAST results are available for this feature:
BLAST of FC930835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_YERPB3.452e-1732.89Anthranilate phosphoribosyltransferase OS=Yersinia... [more]
TRPD_YERPA3.452e-1732.89Anthranilate phosphoribosyltransferase OS=Yersinia... [more]
TRPD_YERP33.452e-1732.89Anthranilate phosphoribosyltransferase OS=Yersinia... [more]
TRPD_PROMM3.452e-1735.22Anthranilate phosphoribosyltransferase OS=Prochlor... [more]
TRPD_PHOLL3.452e-1735.14Anthranilate phosphoribosyltransferase OS=Photorha... [more]
TRPD_FRATO3.452e-1733.33Anthranilate phosphoribosyltransferase OS=Francise... [more]
TRPD_CLAMS3.452e-1737.27Anthranilate phosphoribosyltransferase OS=Clavibac... [more]
TRPG_THEMA4.508e-1736.36Anthranilate synthase component II OS=Thermotoga m... [more]
TRPG_ECOLI4.508e-1739.17Anthranilate synthase component II OS=Escherichia ... [more]
TRPD_PELLD4.508e-1735.22Anthranilate phosphoribosyltransferase OS=Pelodict... [more]

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Properties
Property NameValue
Genbank descriptionC34109E09EF PostHarvP1 Citrus clementina cDNA clone C34109E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930835 ID=FC930835; Name=FC930835; organism=Citrus clementina; type=EST; length=693bp
GAACACAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCT
CTCCATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTT
CGAAACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATT
AACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTC
TAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGAT
TTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGC
TGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAG
AAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCT
ACGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGG
TGATGGTGCAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTG
CAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCT
GCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTT
GGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCA
TGATGTCGACAAAGTATCACCCCTGCATGAAGTTTGTCAGGCC
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