FC930835

Overview
NameFC930835
Unique NameFC930835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:3..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_LEPIN (Anthranilate phosphoribosyltransferase OS=Leptospira interrogans GN=trpD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            LI    LT  EA++ +++++  E  E L+S+FL  +R  GE+  E++G   A+ K A + + +   D +D  GTGGDG  T+NIST ++I+ A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP MK
Sbjct:   10 LIEHKHLTTLEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMK 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_LEPIC (Anthranilate phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=trpD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 52/153 (33.99%), Postives = 81/153 (52.94%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            LI    LT  EA++ +++++  E  E L+S+FL  +R  GE+  E++G   A+ K A + + +   D +D  GTGGDG  T+NIST ++I+ A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP MK
Sbjct:   10 LIEHKHLTALEAESFMNHVMKGEVSEILLSSFLTAMRFNGESVEEVLGCTLALRKNALRPKTVFPFDLLDTCGTGGDGQGTINISTLSAIVLASLGIKVAKHGNRSVSSHTGSSDILTRLGYQTETTQEEVEAHLVNRGFTFLFAPMWHPSMK 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_HALHL (Anthranilate phosphoribosyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=trpD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 49/132 (37.12%), Postives = 68/132 (51.52%), Query Frame = 2
Query:  299 ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGD----AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            A  A I  FL+ +R KGET  E+   A  M + A +V+ +GD     VD  GTGGD   T+N+ST A+ + AA G  VAK             D+LEA G  ++L  E V  C+    +GF+ +  +H  MK
Sbjct:   33 ATPAQIGGFLIGMRLKGETVQEMAAAASVMRELAERVD-VGDDFHRLVDTCGTGGDARGTLNVSTAAAFVTAAGGIPVAKHGNRSVSGRSGSADLLEACGATLELSSEAVAECIRRVNVGFLFAPLHHSAMK 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_CHLL2 (Anthranilate phosphoribosyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=trpD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 54/153 (35.29%), Postives = 75/153 (49.02%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLNEA-DEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            L+S    ++ E    ++ ++N    + +I+A L LL  KG T  E+ G   ++I  A  ++   DAVD  GTGGD A T NIST  SI+A + G  +AK             DVLE LG  IDL  E         G  F+ +  +HP MK V
Sbjct:   10 LLSGDHFSQEEMTQCMNAIMNGVFPDTVIAALLALLEHKGVTSTEVAGAYYSLIAKANTIDLSPDAVDTCGTGGDHAGTYNISTIGSIIANSTGVSIAKHGNRSVTSSCGSADVLEELGFRIDLPVEATVELYARTGFSFLFAPLFHPSMKRV 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_LEPBL (Anthranilate phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKF 685
            LI    ++  EA+  ++ ++  E  E L+S+F+  +RAKGE+  E++G   A+ K A K + +   D +D  GTGGDG  T+N+ST ++I  A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP MK+
Sbjct:   10 LIEHKHISVEEAEFFMNRVMKGEVSEILLSSFVTAMRAKGESVDEVLGCTLALRKNALKPKTVFPFDLLDTCGTGGDGQGTINVSTLSAITLASLGVKVAKHGNRSVSSHTGSSDILARLGYQTEATQEEVEAHLISRGFTFLFAPMWHPSMKY 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_LEPBJ (Anthranilate phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 51/154 (33.12%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKF 685
            LI    ++  EA+  ++ ++  E  E L+S+F+  +RAKGE+  E++G   A+ K A K + +   D +D  GTGGDG  T+N+ST ++I  A+ G KVAK             D+L  LG   +   E V   +   G  F+ +  +HP MK+
Sbjct:   10 LIEHKHISVEEAEFFMNRVMKGEVSEILLSSFVTAMRAKGESVDEVLGCTLALRKNALKPKTVFPFDLLDTCGTGGDGQGTINVSTLSAITLASLGVKVAKHGNRSVSSHTGSSDILARLGYQTEATQEEVEAHLISRGFTFLFAPMWHPSMKY 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_GLUOX (Anthranilate phosphoribosyltransferase OS=Gluconobacter oxydans GN=trpD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 49/146 (33.56%), Postives = 77/146 (52.74%), Query Frame = 2
Query:  251 LTEAEAQASLDYLL-NEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            L   EA+ +   ++  E D   ++AFL  L+ +GETF E+ G  +A+  + T +  +   A+D+ GTGGDG  T+N+ST  + + A  G  VAK             DVLE LG+    D E   R + E G+ F+ + ++HP M+
Sbjct:   20 LDSHEAETAFHAIMAGEVDPVQLAAFLTALKLRGETFAELTGAVQAVRHHMTVLPDVPAGAIDVCGTGGDGLKTLNVSTAVAFVLAGLGVPVAKHGNRALSSASGATDVLEVLGIPPTDDLELQGRRLREDGLVFLAAPQHHPAMR 165          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_FRATM (Anthranilate phosphoribosyltransferase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 52/159 (32.70%), Postives = 82/159 (51.57%), Query Frame = 2
Query:  221 LIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFVR 691
            ++D L +  DL+  E+    DY +  + +    ++ L  L+ K ET  EI     A+     +   + GD   IVGTGGDG NT+NIST A+I+AA  G KVAK             D+LE+ GV I+L P+  ++C++   +GF+    Y    + ++
Sbjct:    7 IVDKLYNLEDLSYQESYQLFDYFIKGQIELPSQTSILTALKLKKETSIEIAAAVEALFDNTKEFPKIKGDLAGIVGTGGDGFNTINISTTAAIVAATAGYKVAKHGGRSVSSKSGSFDLLESFGVNIELAPDQTKQCLELYNLGFLFVPFYSDGFRHIK 165          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_ANATD (Anthranilate phosphoribosyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 53/159 (33.33%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  218 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA-VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            ++++ + ++ DL   + +  LD +L  E DE    AFL  L+ KGET  EI     A    A K+     A +D  GTGGDG  T NIST A+I+ +    KVAK             D+LE LG+ I  + + + + +++    F+ +  YHP MK V
Sbjct:    4 DVLELVTNKKDLEYDQVKNLLDNILEGELDEIKFGAFLAALKTKGETEKEISAFVDAFYDKAKKLNFDHPATIDTCGTGGDGKGTFNISTAAAIVLSCFDVKVAKHGNRSITSNSGSADILEKLGIDIQAEEDKILKGLEKLNFAFLFAPLYHPAMKKV 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_DESDG (Anthranilate phosphoribosyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=trpD PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 54/159 (33.96%), Postives = 80/159 (50.31%), Query Frame = 2
Query:  218 ELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            E+++ L S   L    A  + D L++ E   A   +FL+ LR+ GET   +    RA + +A  ++GL  D +DIVGTGGDG N+ N ST A++  A  G KV K             DV+E LG+ ++  PE V   +      F+ +  YHP  + V
Sbjct:    5 EILETLASGGVLPPETAHMAFDRLMSGEMTPAQAGSFLMGLRSHGETPELVASAVRAALAHARLIQGLEYDRIDIVGTGGDGRNSFNCSTAAALTLAGMGYKVVKHGNRAVSSTSGSADVVEGLGLPLETAPEDVPVLLARHNFVFLFAPFYHPAFRHV 163          
The following BLAST results are available for this feature:
BLAST of FC930835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_LEPIN6.510e-1633.99Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_LEPIC6.510e-1633.99Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_HALHL6.510e-1637.12Anthranilate phosphoribosyltransferase OS=Halorhod... [more]
TRPD_CHLL26.510e-1635.29Anthranilate phosphoribosyltransferase OS=Chlorobi... [more]
TRPD_LEPBL8.502e-1633.12Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_LEPBJ8.502e-1633.12Anthranilate phosphoribosyltransferase OS=Leptospi... [more]
TRPD_GLUOX8.502e-1633.56Anthranilate phosphoribosyltransferase OS=Gluconob... [more]
TRPD_FRATM8.502e-1632.70Anthranilate phosphoribosyltransferase OS=Francise... [more]
TRPD_ANATD8.502e-1633.33Anthranilate phosphoribosyltransferase OS=Anaeroce... [more]
TRPD_DESDG1.110e-1533.96Anthranilate phosphoribosyltransferase OS=Desulfov... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109E09EF PostHarvP1 Citrus clementina cDNA clone C34109E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930835 ID=FC930835; Name=FC930835; organism=Citrus clementina; type=EST; length=693bp
GAACACAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCT
CTCCATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTT
CGAAACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATT
AACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTC
TAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGAT
TTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGC
TGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAG
AAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCT
ACGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGG
TGATGGTGCAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTG
CAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCT
GCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTT
GGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCA
TGATGTCGACAAAGTATCACCCCTGCATGAAGTTTGTCAGGCC
back to top