FC930835

Overview
NameFC930835
Unique NameFC930835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9351 contig Ccv1_Contig9351:3..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_MYCGI (Anthranilate phosphoribosyltransferase OS=Mycobacterium gilvum (strain PYR-GCK) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 70/173 (40.46%), Postives = 95/173 (54.91%), Query Frame = 2
Query:  167 PQPAVSDNTRPLTPCFNELIDCLISRVDLTEAEAQASLDYLLNE-ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV--EGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 673
            P+PA        TP +  ++  L +   L   +   ++D ++   A  A I+AF V ++ K  T  E+  LA  M+K+A  V  + +G   VDIVGTGGDGANTVN+ST ASI+ AA G  V K             D LEALG+ IDL P+ V RCV E GIGF  + ++HP
Sbjct:    6 PRPAAPTTDPGDTPTWAMILGRLTTGQSLLPGQTAWAMDQIMTGVATPAQIAAFAVSMKMKRPTSAEVTELAEIMLKHALPVPTDTIGTHTVDIVGTGGDGANTVNLSTMASIVVAAAGVPVVKHGNRAASSLSGGADTLEALGLRIDLGPDDVARCVAEVGIGFAFAPQFHP 178          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_AGRVS (Anthranilate phosphoribosyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 63/147 (42.86%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  251 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            LT  EA  + + L++ EA  A I  FL+ LR +GET  EIVG    M +    V    D++DIVGTGGDG  T NIST A+++ A  G  VAK             D L ALGV +D+DP  + RC+ EAG+GFM +  +H  M+ V
Sbjct:   17 LTRDEAADAFNILMSGEATPAQIGGFLIALRMRGETVPEIVGAVTVMRQKMLPVIAPTDSIDIVGTGGDGTGTYNISTLAALIVAGAGVPVAKHGNKALSSKSGAADSLTALGVKLDIDPSVIGRCISEAGVGFMFAQLHHSAMRHV 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_ACIAC (Anthranilate phosphoribosyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 64/134 (47.76%), Postives = 79/134 (58.96%), Query Frame = 2
Query:  296 EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA---VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            E    + +A +  LR K ET GEI   A+ M + + KV  + D    VDIVGTGGDGANT NIST A  +AAA GAK AK             DV+E+LGV IDL PE + RC+ + GIGFM +  +HP MK V
Sbjct:   34 ELSPVMTAAIVTGLRVKKETIGEITAAAQVMRELSRKV-AVADTTHLVDIVGTGGDGANTFNISTCAMFVAAAAGAKTAKHGGRGVSSKSGSADVMESLGVHIDLPPEAIARCIADTGIGFMFAPNHHPAMKNV 166          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_RHOFD (Anthranilate phosphoribosyltransferase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 2
Query:  287 LLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            +  E    +++A +  LR K ET GEI   A+ M +++TKV        VDIVGTGGDG++T NIST A  +AAA GA+V+K             DV+E+LGV I+L PE + +C+++ G+GFM +  +HP MK V
Sbjct:   35 MTGEWSPVMMAALITGLRVKKETIGEITAAAQVMREFSTKVNVADTSHLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVSKHGGRSVSSKSGSADVMESLGVNINLSPEAIAQCIEQVGVGFMFAPNHHPAMKNV 170          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEPW (Anthranilate phosphoribosyltransferase OS=Pseudomonas putida (strain W619) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 63/153 (41.18%), Postives = 86/153 (56.21%), Query Frame = 2
Query:  233 LISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVE--GLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            ++  +DL+  E +  +  ++  +  EA I AFL+ +R K E+  EIVG    M + A KVE   L   VDIVGTGGDGAN  N+ST +S + AA G  VAK             D+LEA G+ ++L P  V RC+D  GIGFM +  +H  MK
Sbjct:   10 IVGHLDLSTEEMRDVMRQIMTGQCSEAQIGAFLMGMRMKSESIDEIVGAVSVMRELADKVELKSLDGVVDIVGTGGDGANIFNVSTASSFVLAAAGCTVAKHGNRAVSGKSGSADLLEAAGIYLNLTPTQVGRCIDSLGIGFMFAQSHHSAMK 162          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_PSEMY (Anthranilate phosphoribosyltransferase OS=Pseudomonas mendocina (strain ymp) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 66/159 (41.51%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  218 ELIDCLISRVDLTEAEAQASL-DYLLNEADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDA---VDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            E ++ +++++DLT  E QA + + +  +  +A I AFL+ +R K ET  EIVG A  M + A  V  + DA   VD  GTGGDG N  N+ST A+ + AA G KVAK             D+LEA GV + L PE V RCV+  G+GFM +  +H  MK
Sbjct:    5 EALNRIVAQLDLTTEEMQAVMREIMTGQCTDAQIGAFLMGMRMKSETIDEIVGAASVMRELAAPV--VIDAERLVDTCGTGGDGMNIFNVSTAAAFVVAAAGGKVAKHGNRAVSGKSGSADLLEAAGVYLGLKPEQVARCVESVGVGFMFAPSHHGAMK 161          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_CLOTH (Anthranilate phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=trpD PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  224 IDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKV-EGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            I  L+   +L+E+E   +LD ++  +A  A I +F+  LR KGET  EI G A+ M   A K+   +   +D  GTGGDG NT NIST  + +AAA G  VAK             DVLEALGV IDLDP  V+ C+++ GIGF+ +  +H  MK
Sbjct:    6 ISKLVEGKNLSESEIIEALDCIMEGKATPAQIGSFITALRIKGETIEEITGCAKVMRAKADKICPNVDYYIDTCGTGGDGTNTFNISTATAFVAAAGGVYVAKHGNRSVSSKSGSADVLEALGVNIDLDPVQVKECIEKVGIGFIYAPVFHKSMK 160          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD2_RALSO (Anthranilate phosphoribosyltransferase 2 OS=Ralstonia solanacearum GN=trpD2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.973e-24
Identity = 61/128 (47.66%), Postives = 73/128 (57.03%), Query Frame = 2
Query:  299 ADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMK 682
            A  A + A L+ LR +GET  EIVG A AM      V+   DAVDIVGTGGD A T NIST A+ + A  G  VAK             DVL ALGV +D  P  + RC+ EAGIGFM +  +HP +K
Sbjct:   34 ASHAQLGALLMALRVRGETVEEIVGAALAMRARMVPVKAPADAVDIVGTGGDNAGTYNISTCAAFIVAGAGVPVAKHGNRALSSKSGAADVLSALGVNLDQTPADIERCIAEAGIGFMFAPTHHPALK 161          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_OLICO (Anthranilate phosphoribosyltransferase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=trpD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = 2
Query:  212 FNELIDCLISRVDLTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            F  ++  L     L+  EA A+ D+L++ EA  + I   L+ +R +GET  EI G    M     +V    DAVD+VGTGGDG+ +VN+ST A+ + A  G  VAK             DVL +LGV I+L PE V  C+ +AGIGFM +  +HP ++ V
Sbjct:    4 FKAILAKLADGKSLSRDEAVAAFDHLMSGEATPSQIGGALMAMRVRGETVDEITGAVSTMRAKMLRVTAPDDAVDVVGTGGDGSGSVNVSTCAAFIVAGAGVPVAKHGNRAMSSKSGAADVLASLGVNIELTPEQVGACIAKAGIGFMFAPAHHPAIRHV 163          
BLAST of FC930835 vs. ExPASy Swiss-Prot
Match: TRPD_AGRT5 (Anthranilate phosphoribosyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=trpD PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.495e-24
Identity = 62/147 (42.18%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  251 LTEAEAQASLDYLLN-EADEALISAFLVLLRAKGETFGEIVGLARAMIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQXXXXXXXXXXXXDVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPCMKFV 688
            L   +A+ + D L++ EA  + I  FL+ LR +GET  EIVG   +M      V    +A+DIVGTGGDG  T NIST ASI+ A  G  VAK             D L ALGV +D+ P+ + RC+ EAG+GFM +  +H  M+ V
Sbjct:   17 LNREDARTAFDILMSGEATPSQIGGFLMALRVRGETVDEIVGAVSSMRARMLPVSAPANAIDIVGTGGDGIGTYNISTLASIITAGTGLPVAKHGNRALSSKSGTADALSALGVRLDIGPDLIARCIAEAGLGFMFAQMHHSAMRHV 163          
The following BLAST results are available for this feature:
BLAST of FC930835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TRPD_MYCGI3.808e-2440.46Anthranilate phosphoribosyltransferase OS=Mycobact... [more]
TRPD_AGRVS3.808e-2442.86Anthranilate phosphoribosyltransferase OS=Agrobact... [more]
TRPD_ACIAC3.808e-2447.76Anthranilate phosphoribosyltransferase OS=Acidovor... [more]
TRPD_RHOFD4.973e-2442.65Anthranilate phosphoribosyltransferase OS=Rhodofer... [more]
TRPD_PSEPW4.973e-2441.18Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_PSEMY4.973e-2441.51Anthranilate phosphoribosyltransferase OS=Pseudomo... [more]
TRPD_CLOTH4.973e-2442.58Anthranilate phosphoribosyltransferase OS=Clostrid... [more]
TRPD2_RALSO4.973e-2447.66Anthranilate phosphoribosyltransferase 2 OS=Ralsto... [more]
TRPD_OLICO6.495e-2439.38Anthranilate phosphoribosyltransferase OS=Oligotro... [more]
TRPD_AGRT56.495e-2442.18Anthranilate phosphoribosyltransferase OS=Agrobact... [more]

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Properties
Property NameValue
Genbank descriptionC34109E09EF PostHarvP1 Citrus clementina cDNA clone C34109E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930835 ID=FC930835; Name=FC930835; organism=Citrus clementina; type=EST; length=693bp
GAACACAATGACAATGAGAGCGTTGTTGAATTTAACTGCAGTTTCTTCCT
CTCCATTTAATAATAATCACCCAAATCACCGGCCTTCCTTACCGTCGCTT
CGAAACTGTGGATTTACGACTGCGGGTAATAATCCGAGATGCAGAGAATT
AACTGCTATTCAAACCCCTCAGCCGGCTGTTTCTGATAATACTCGTCCTC
TAACGCCCTGCTTTAATGAGTTGATCGATTGCTTGATAAGTCGAGTGGAT
TTAACGGAGGCGGAGGCTCAAGCTTCGCTGGATTATTTGTTGAATGAAGC
TGATGAGGCCTTGATTAGTGCTTTTCTTGTTTTGCTCAGAGCCAAAGGAG
AAACATTTGGAGAGATTGTGGGATTGGCCAGGGCGATGATAAAGTATGCT
ACGAAGGTGGAAGGGCTGGGTGATGCAGTTGACATTGTGGGTACAGGAGG
TGATGGTGCAAACACAGTGAACATTTCAACTGGTGCTTCAATTCTTGCTG
CAGCTTGTGGTGCAAAAGTTGCCAAGCAAGGGAGTCGGTCTAGTTCTTCT
GCATGTGGAAGTGCTGATGTGTTAGAAGCTTTGGGTGTCGTTATTGACTT
GGACCCAGAGGGTGTAAGAAGGTGTGTGGATGAGGCAGGAATTGGTTTCA
TGATGTCGACAAAGTATCACCCCTGCATGAAGTTTGTCAGGCC
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