FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.207e-29
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDI-LSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAA 599
            M  K  + W   +PW VEEI++  P+  EV+++M  A +C +D  L +   P+  FP + GHEG G+V  +G  V +   GD V+  FI  C +C +C + M NLC L         + DGS R+  RGQ +Y +    T + YMVV  + VVK+DPS+   +A  + CG ++G+G+A
Sbjct:    1 MKTKGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSA 178          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.020e-19
Identity = 55/145 (37.93%), Postives = 76/145 (52.41%), Query Frame = 3
Query:  267 MVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            ++ES+G+ V ++  GD V+P F GEC+EC +C S  +N+C L    T  G+M  DG SR SI G+ +YH    ST +EY V+    V K++P   L     LSCG S+G GA+    K  K                 +GARI G
Sbjct:    1 IIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGISTGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAG 145          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 58/211 (27.49%), Postives = 94/211 (44.55%), Query Frame = 3
Query:   75 TCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIR-GQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQGQLK 704
            T + V+   +G P ++ +I +  P  +EV   +   ++CHTD+   +G     FP +LGHE  G VES+G+ V  ++ GD V+  +   C +C  C       C     TF     + + +M++  G +L          +  +V A    KVDP+ D ++A  L CG  +G GAA     V +                + GAR+ G  K
Sbjct:    3 TVRGVIARSKGAPVELTDIVIPDPGPSEVTALIATCAVCHTDLTYREGGINDEFPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYCFS---TF-----NATQKMTLTDGTELTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANK 205          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 55/186 (29.57%), Postives = 87/186 (46.77%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILS-SKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYH----------IFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGA 596
            M  KA +   +  P+ +E + +  P   +V V+++   +CHTD++   + +P+PL P V GHEG G+VE +G  VK+++ GD V+ TF   C  C+ C S     C       +   P+   R S+ G+   H           F  S+   Y +      VKV   + L L   L CG  +G G+
Sbjct:    1 MEIKAAIVRQKNGPFLLEHVALNEPAEDQVLVRLVATGLCHTDLVCRDQHYPVPL-PMVFGHEGAGVVERVGSAVKKVQPGDHVVLTFY-TCGSCDACLSGDPTSCA------NSFGPNFMGR-SVTGECTIHDHQGAEVGASFFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGS 177          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V  K+LY  ICH+D+   K  +    +P V GHE VG V  +G +V++ K GD V +   +G CR CENCT  + N C K   T+     DGS+             T    ++ MV D +++V++  ++ L  A+ L C
Sbjct:   37 DVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGST-------------TYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLC 164          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V VK++Y  ICH+D++  +    +  +P V GHE VG+V  IG EVK+ K G+ V +   +G CR C NC   M   C K  +T++ +  DG+              T       MVVD  +VV++  ++ L  A+ L C
Sbjct:   36 DVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTP-------------TQGGFASSMVVDQMFVVRIPENLPLEQAAPLLC 163          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V VK++Y  ICH+D++  +    +  +P V GHE VG+V  IG EVK+ K G+ V +   +G CR C NC   M   C K  +T++ +  DG+              T       MVVD  +VV++  ++ L  A+ L C
Sbjct:   36 DVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTP-------------TQGGFASSMVVDQMFVVRIPENLPLEQAAPLLC 163          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            EVRVK+LY  ICH+D+   K  +   ++P V GHE +G V  IG++V +   GD V +   +  CR CE+C  +  N C K   T++G+  DG+                   ++++VVD  Y VK+  ++ L  A+ L C
Sbjct:   40 EVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGT-------------INYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLC 167          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V V+++Y  ICH+D++       +  +P V GHE VG+V  IG EVK+ K G+ V +   +G CR C NC   M   C K  +T++ +  DG+              T       MVVD  +VV++  ++ L  A+ L C
Sbjct:   36 DVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTP-------------TQGGFASSMVVDQMFVVRIPENLPLEQAAPLLC 163          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V V+++Y  ICH+D++       +  +P V GHE VG+V  IG EVK+ K G+ V +   +G CR C NC   M   C K  +T++ +  DG+              T       MVVD  +VV++  ++ L  A+ L C
Sbjct:   36 DVIVRVIYCGICHSDLVQMHNEMGMSNYPMVPGHEVVGVVTEIGSEVKKFKVGEHVGVGCIVGSCRSCSNCNGSMEQYCSKRIWTYNDVNHDGTP-------------TQGGFASSMVVDQMFVVRIPENLPLEQAAPLLC 163          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADHB_MYCBO9.207e-2937.08Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
ADH1_ZEALU1.020e-1937.93Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]
FADH_AMYME1.247e-1727.49NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
XYLB_PSEPU9.883e-1529.57Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
MTDH_FRAAN9.883e-1533.33Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH_PINTA1.291e-1433.33Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA1.291e-1433.33Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH6_ARATH1.686e-1433.33Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CADH7_PICAB3.755e-1432.62Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB3.755e-1432.62Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
back to top