FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 3
Query:   75 TCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLK-YPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            T  A       EP     I    P   +V + + +A ICH+DI + K  +  P +P V GHE  G+V ++G EV + ++GD V +  F+  CREC +CT  +   C     FT++ +  DG               T    +E +VVD NYV+++   + L +A+ L C
Sbjct:    3 TVAAYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQP-------------TQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLC 158          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 3
Query:   75 TCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLK-YPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            T  A       EP     I    P   +V + + +A ICH+DI + K  +  P +P V GHE  G+V ++G EV + ++GD V +  F+  CREC +CT  +   C     FT++ +  DG               T    +E +VVD NYV+++   + L +A+ L C
Sbjct:    3 TVAAYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQP-------------TQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLC 158          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 54/154 (35.06%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  165 VKMLYAS---ICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHGLMPDGSSRMSIRGQKLY--HIFTCSTMTEYMVVDANYVVKVDPSID---LSLASFLSCGYSSGFGA 596
            +K L+ S   +CHTD+    G  P PL P VLGHEG G+VE++G  VK LK GD V+ TF   C  C +C  E  + CL +    +     DG   +S +G ++     F  S+ +   +   + +VK+D  +D   + L   L CG  +G GA
Sbjct:    7 MKCLFVSESCVCHTDLAIKDGVLPFPL-PAVLGHEGSGIVEAVGPGVKHLKPGDAVVMTF-ASCGHCASCEHERPSYCLDFGAQNYSAQRADGPVLLS-QGDEVISGFFFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGA 157          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 42/144 (29.17%), Postives = 74/144 (51.39%), Query Frame = 3
Query:  147 KATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            ++ +V +++ +  +C+ D+  ++      ++P V GHE  G+V  +G +VK  K GD V + T++  CR+CENC S + N C ++ FTF+G+  DG+              T    + ++VV   Y  K+     L  A+ L C
Sbjct:   33 QSDDVSLRITHCGVCYADVAWTRNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGT-------------VTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLC 163          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 42/141 (29.79%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V VK+L+  +CH+D+ + K  +    +P + GHE VG+   +G  V + KEGD V +   IG C+ CE+C  ++ N C K  FT++    DG+SR                 ++ +VVD  +V+ +   +     + L C
Sbjct:   33 DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSRNQ------------GGYSDVIVVDHRFVLSIPDGLPSDSGAPLLC 161          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 46/145 (31.72%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSS 584
            +V +++LY  ICHTD+  +K  F   ++P V GHE +G+V  +G +V++ K GD V +  F+  CR C+NC   + N C K+  T      DG++             T    ++ MVVD ++V ++   + L       CG SS
Sbjct:   40 DVALEVLYCGICHTDLHMAKNDFGNSIYPYVPGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTT-------------TYGGYSDSMVVDEHFVTRIPEGLPLD-----GCGSSS 166          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 45/158 (28.48%), Postives = 81/158 (51.27%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEK 623
            +V  K+LY  ICH+D+   K  +   ++P + GHE VG+V  +G++V+  K GD V +   +G CR CE+C + + N C K   T+     DG+              T    ++ MVV+ ++ V++  ++ L   + L C   + + +  K F+++K
Sbjct:   40 DVTFKVLYCGICHSDLHYIKNEWGNAVYPAIPGHEIVGVVTEVGNKVQNFKVGDKVGVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGT-------------LTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTVY-SPLKHFELDK 183          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 43/141 (30.50%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V VK+L+  +CH+D+ + K  +    +P + GHE VG+   +G  V + KEGD V +   IG C+ CE+C  ++ N C K  FT++    DG+     R Q  Y        ++ +VVD  +V+ +   +     + L C
Sbjct:   33 DVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGT-----RNQGGY--------SDVIVVDHRFVLSIPDGLPSDSGAPLLC 160          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 47/141 (33.33%), Postives = 67/141 (47.52%), Query Frame = 3
Query:  156 EVRVKMLYASICHTDILSSKG-FPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            +V VK+LY  ICHTDI  +K       +P V GHE VG V  +G EV +   GD+V +   +G CREC  C + +   C K  ++++ +  DG               T       MVVD  +VVK+   +    A+ L C
Sbjct:   36 DVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYSAGDVVGVGVIVGCCRECHPCKANVEQYCNKRIWSYNDVYTDGRP-------------TQGGFASAMVVDQKFVVKIPAGLAPEQAAPLLC 163          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 3
Query:  147 KATEVRVKMLYASICHTDI-LSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIV-IPTFIGECRECENCTSEMANLCLKYPFTFHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSC 572
            K  +V +K+LY  ICHTD+ +    +   ++P V GHE VG+V  +G  V + K GD V +  F+  CR CE C +   N C K   T +G+  D     + +G            ++ +VV+ +YV++V   + L  A+ L C
Sbjct:  106 KDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQG----------GFSDAIVVNEHYVLRVPAGLPLDSAAPLLC 239          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADHC_MYCTU6.406e-1430.77NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO6.406e-1430.77NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
TERPD_PSESP1.093e-1335.06Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]
CADH1_ORYSJ1.093e-1329.17Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
CADH2_ARATH1.864e-1329.79Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH3_STYHU2.434e-1331.72Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
MTDH_MESCR7.082e-1328.48Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH3_ARATH7.082e-1330.50Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH2_ORYSJ1.208e-1233.33Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CAD8C_ORYSJ1.208e-1231.94Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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