FC930839

Overview
NameFC930839
Unique NameFC930839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.796e-40
Identity = 89/210 (42.38%), Postives = 120/210 (57.14%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDIL--SSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLC-LKYPFTFHGLM-PDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVEKXXXXXXXXXXXXXXXXMDGARIQG 695
            C+A V W  G+P  +EE++V PP+A EVR+K+L+ S+CHTD+    +KG   PLFPR+ GHE  G+VES+G+ V  LK GD  +P F GEC EC +C SE +N+C L    T  G+M  D  SR SI+GQ ++H    ST +EY VV A  V K++P   L     LSCG  +G GA     K +                  +GAR+ G
Sbjct:   11 CRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKG-QTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSG 219          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 85/185 (45.95%), Postives = 112/185 (60.54%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            +TCKA V W   +P  +E+I+V PPKA EVR+K+    +CHTD  +  G  P  LFP VLGHEG G+VES+G+ V   K GD VI  +I +C EC+ C S   NLC K   T   G+MP+G+SR+S +GQ+L+H    ST  EY VV    + K++    L     L CG S+G+GAA    KVE
Sbjct:    9 ITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHTDAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQCNECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVE 193          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.159e-39
Identity = 83/190 (43.68%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   57 SISPAMTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            ++   + C+A V W  G+P  +EE++V PP+A EVR+K++   ICHTD  +  G  P  +FP VLGHEG G+VES+G+ V + K GD VIP ++ +C EC+ C +   NLC K   T   GLMP+G+SR S  GQ L+H    ST +EY VV    + KV     L     L C  S+G+GAA    KVE
Sbjct:    2 TVGKTIRCRAAVAWEAGKPLSMEEVEVAPPQAGEVRIKIVATGICHTDAYTLSGSDPEGVFPSVLGHEGAGIVESVGEGVTKFKSGDAVIPLYVPQCGECKFCKNPKTNLCQKIRLTQGKGLMPNGTSRFSCNGQVLFHFMGSSTFSEYTVVAEISLAKVHEKAPLDKVCLLGCAISTGYGAALNTAKVE 191          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.514e-39
Identity = 88/185 (47.57%), Postives = 113/185 (61.08%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            +TCKA V WG  EP  +E+IQV PPKA EVRVK+ ++++CHTD  +  G  P   FP VLGHEG G+VESIG+ V  ++ GD VI  +  EC+EC+ C S   NLC K   T   GLMPDG+SR S R + L H   CS+ ++Y VV    +V +  S  L     L CG ++GFGA     KVE
Sbjct:    8 ITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVE 192          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.514e-39
Identity = 86/186 (46.24%), Postives = 113/186 (60.75%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHG-LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            +TCKA V W   +P  +E++QV PP+A EVRVK+L+ ++CHTD  +  G  P  LFP +LGHE  G+VES+G+ V E++ GD VIP +  ECREC+ C S   NLC K    T  G +M D  SR SI G+ +YH    ST ++Y VV    V K++P   L     L CG S+G GA W   KVE
Sbjct:   10 ITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVE 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 86/186 (46.24%), Postives = 112/186 (60.22%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHG-LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            +TCKA V W    P  +E++QV PP+A EVRVK+L+ ++CHTD  +  G  P  LFP +LGHE  G+VES+G+ V E++ GD VIP +  ECREC+ C S   NLC K    T  G +M D  SR SI G+ +YH    ST ++Y VV    V K++P   L     L CG S+G GA W   KVE
Sbjct:   10 ITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVE 195          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 85/183 (46.45%), Postives = 111/183 (60.66%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W   +P  +EEI+V PPKA EVR+K+L  ++CHTD  +  G  P   FP VLGHEG G+VES+G+ V + K GD VIP +I +C EC+ C +   NLC K   T   G+MPDG+SR++ RG+ LYH    ST +EY VV    + +V P         L CG S+G+GA     KVE
Sbjct:   10 CKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGMMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAKVE 192          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 83/183 (45.36%), Postives = 116/183 (63.39%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDI-LSSKGFPLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFTFH-GLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA + W   +P  +E+I+V PPKA EVR+K+L   IC +D  + S  F +PL P VLGHE  G+VES+G+ V  +K GD VIP F+ +C +C +C S   NLC     +   GLMPDG+SR + +G+ L+H  + S+ TEY VV  N VVK+D +  L     + CG+S+G+GAA +  KVE
Sbjct:    9 CKAAIAWEIKKPLSIEQIEVAPPKAHEVRIKILATGICRSDDHVISGAFKMPL-PMVLGHEAAGVVESVGEGVTCVKPGDKVIPLFVPQCGKCSSCRSTRGNLCTSNDLSAATGLMPDGTSRFTCKGKSLHHFISTSSFTEYTVVHENSVVKIDAAAPLEKVCLIGCGFSTGYGAAVETAKVE 190          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.514e-39
Identity = 84/186 (45.16%), Postives = 113/186 (60.75%), Query Frame = 3
Query:   72 MTCKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKY-PFTFHG-LMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            +TCKA V +   +P  +E++QV PP+A EVR+K+LY ++CHTD  +  G  P  LFP +LGHE  G+VES+G+ V E++ GD VIP +  ECREC+ C S   NLC K    T  G +M D  SR S+ G+ +YH    ST ++Y VV    V K+DP+  L     L CG  +G GA W   KVE
Sbjct:    8 ITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVE 193          
BLAST of FC930839 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 79/183 (43.17%), Postives = 110/183 (60.11%), Query Frame = 3
Query:   78 CKAVVCWGEGEPWKVEEIQVEPPKATEVRVKMLYASICHTDILSSKGF-PLPLFPRVLGHEGVGMVESIGDEVKELKEGDIVIPTFIGECRECENCTSEMANLCLKYPFT-FHGLMPDGSSRMSIRGQKLYHIFTCSTMTEYMVVDANYVVKVDPSIDLSLASFLSCGYSSGFGAAWKEFKVE 620
            CKA V W  G+P  +EE++V PP A EVR+K+    +CHTD  +  G  P  LFP +LGHEG G VES+G+ V + K GD VIP ++ +C EC+ C +   NLC K   T   GL+PD +SR + +G++++H    ST +EY VV    + KV+    +     L CG S+G+GAA    KVE
Sbjct:   10 CKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPEGLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQGQGLLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGISTGYGAALNTAKVE 192          
The following BLAST results are available for this feature:
BLAST of FC930839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
ADH1_TRIRP6.796e-4042.38Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADHX_DROME8.876e-4045.95Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADHL_GADMO1.159e-3943.68Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
FADH1_SCHPO1.514e-3947.57Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_ORYSI1.514e-3946.24Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSJ1.977e-3946.24Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_MYXGL1.977e-3946.45Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH1A_UROHA1.977e-3945.36Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADHX_ARATH7.514e-3945.16Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_SPAAU9.814e-3943.17Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34109F01EF PostHarvP1 Citrus clementina cDNA clone C34109F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930839 ID=FC930839; Name=FC930839; organism=Citrus clementina; type=EST; length=710bp
GAGATTAGTTTGAACTTTGAAGTTGTAAAATCAACGAGTCTCCAGCAATA
AAGATGAGCATATCGCCAGCCATGACATGCAAAGCTGTTGTATGCTGGGG
TGAAGGAGAACCATGGAAAGTAGAAGAGATACAGGTGGAGCCTCCAAAAG
CAACAGAAGTTAGAGTCAAAATGCTTTATGCTAGCATTTGTCACACTGAT
ATCTTATCCTCTAAAGGGTTCCCATTGCCCCTTTTCCCTCGTGTTCTTGG
TCATGAAGGTGTCGGGATGGTGGAGAGTATCGGTGATGAAGTGAAAGAAT
TAAAGGAAGGAGATATTGTGATTCCAACATTTATTGGAGAATGTAGAGAA
TGTGAAAATTGCACATCAGAGATGGCCAATCTATGCCTAAAATATCCATT
CACCTTCCATGGGTTAATGCCGGATGGCAGTTCAAGAATGTCCATAAGAG
GCCAGAAATTGTATCACATATTTACATGCTCCACAATGACCGAATATATG
GTGGTTGATGCCAATTATGTTGTGAAAGTTGATCCAAGTATAGATCTTTC
ACTTGCTAGCTTCCTTTCATGTGGATACTCATCAGGATTTGGTGCAGCTT
GGAAGGAATTCAAAGTTGAAAAAGGATCAAGTGTTGCTGTTTTTGGCCTT
GGTGCTGTTGGATTAGGGGTTATGGATGGAGCCAGAATCCAGGGGCAGCT
AAAATATTGG
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