FC930842

Overview
NameFC930842
Unique NameFC930842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930842_ssr127 microsatellite FC930842_ssr127:127..142. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930842_ssr10 microsatellite FC930842_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_NOSP7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.668e-17
Identity = 37/75 (49.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K I+++GSTGSIGTQTLDIV ++ D+FR+V LAAG+N+ +LA Q+++F+P++ A+ +E  L  +KEA+ +++  P
Sbjct:    2 KAITLVGSTGSIGTQTLDIVTQYPDQFRIVGLAAGNNVEMLAAQIRQFRPKIAAICSEDKLPALKEAIIDLDPQP 76          

HSP 2 Score: 23.0978 bits (48), Expect = 5.668e-17
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:  629 KPEILAGEQGVIEAA 673
            +P +LAGE GVIE A
Sbjct:   75 QPILLAGEAGVIEVA 89          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CYAP8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.296e-17
Identity = 42/75 (56.00%), Postives = 61/75 (81.33%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K I++LGSTGSIGTQTLDIV ++ D+F+VV LA  +N  LLA Q+K+F+P++VA+  ES L+ IK+A+A+++ SP
Sbjct:    2 KKITILGSTGSIGTQTLDIVQQYPDQFQVVGLATRNNGELLAQQIKQFRPEIVAICQESQLNTIKDAIASLDYSP 76          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNJA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxr PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  417 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 650
            I++LGSTGSIGTQTLD+VA++ ++FRVV L + SN+TLLA+QV RF+PQ+VA+  E LL E++  L  +   P    G
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFRVVGLTSYSNVTLLAEQVWRFRPQIVAIGREELLPELRSLLTGMRPLPELVAG 81          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNP6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxr PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 37/80 (46.25%), Postives = 63/80 (78.75%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 650
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R +P++VA+++ + L E++ A+A+++  P    G
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEIVAIQDAAQLSELQAAIADLDNPPLILTG 81          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNE7 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus elongatus (strain PCC 7942) GN=dxr PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 37/80 (46.25%), Postives = 63/80 (78.75%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 650
            K +++LGSTGSIGTQTLDI+ ++ D+FR+V LAAG N+ LL++Q++R +P++VA+++ + L E++ A+A+++  P    G
Sbjct:    2 KAVTLLGSTGSIGTQTLDILEQYPDRFRLVGLAAGRNVALLSEQIRRHRPEIVAIQDAAQLSELQAAIADLDNPPLILTG 81          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNS9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9902) GN=dxr PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.123e-16
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPR 638
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL AG N+ LL +Q++R +P++VA+ +E+LL E+K+ L  ++ S R
Sbjct:    2 KAISVLGSTGSIGTQTLQIVDDFPDQFRVVALTAGRNLALLVEQIQRHQPELVALADEALLPELKQRLEALDPSDR 77          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_THEEB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.732e-16
Identity = 39/80 (48.75%), Postives = 61/80 (76.25%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 650
            K +++LGSTGSIGTQTLDIVA++ D+FRVV LAAG N+  L  Q+++F+P++V++ +   L E++ ALA++ + P+   G
Sbjct:   20 KALNLLGSTGSIGTQTLDIVAQYPDRFRVVGLAAGRNLERLIPQIRQFQPEIVSIADPEQLPELEAALADLPQKPQLVAG 99          

HSP 2 Score: 21.1718 bits (43), Expect = 2.732e-16
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  626 RKPEILAGEQGVIEAA 673
            +KP+++AGE G+   A
Sbjct:   92 QKPQLVAGEAGIAAVA 107          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNJB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. GN=dxr PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  417 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPG 650
            I++LGSTGSIGTQTLD+VA++ ++F+VV L + SN+ LLA+QV+RF+PQ+VA+  E LL E++  L  +   P    G
Sbjct:    4 ITLLGSTGSIGTQTLDLVAQYPERFQVVGLTSYSNVALLAEQVRRFRPQMVAIGREELLPELRSLLTGIRPLPELVAG 81          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROM5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.066e-16
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE-ESPRFWPGNRESL 665
            K I+VLGSTGSIGTQTL+IV E  +KF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N+   +P    G RE++
Sbjct:    2 KYITVLGSTGSIGTQTLEIVRELPNKFKVVALSAGRNIDLLTEQVSQHKPEVIAIDDENLLTDLKNNINNLGISNPPIVLGGREAI 87          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROMP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  423 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE-ESPRFWPGNRESL 665
            +LGSTGSIGTQTL+IV+E  DKF+VVAL+AG NI LL +QV + KP+V+A+ +E+LL ++K  + N+   +P    G RE++
Sbjct:    1 MLGSTGSIGTQTLEIVSELPDKFKVVALSAGRNIDLLTEQVSQHKPEVIAIEDENLLTDLKNNINNLGISNPPIVLGGREAI 82          
The following BLAST results are available for this feature:
BLAST of FC930842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_NOSP75.668e-1749.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CYAP87.296e-1756.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJA9.529e-1753.851-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNP61.625e-1646.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNE71.625e-1646.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS92.123e-1656.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEEB2.732e-1648.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNJB2.772e-1651.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM58.066e-1652.331-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMP1.054e-1552.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109F04EF PostHarvP1 Citrus clementina cDNA clone C34109F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930842 ID=FC930842; Name=FC930842; organism=Citrus clementina; type=EST; length=674bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
AATACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGATAAAAAGA
GGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGCAG
TCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCAAA
TCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATA
ATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCT
CCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTG
GGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAA
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCC
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