FC930842

Overview
NameFC930842
Unique NameFC930842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930842_ssr127 microsatellite FC930842_ssr127:127..142. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930842_ssr10 microsatellite FC930842_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_ANAVT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 36/75 (48.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K I+++GSTGSIGTQTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++  P
Sbjct:    2 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQP 76          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_ANASP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena sp. (strain PCC 7120) GN=dxr PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 36/75 (48.00%), Postives = 59/75 (78.67%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESP 635
            K I+++GSTGSIGTQTLDIV+++ D+FR+V LAAGSN+ +LA+Q+++F+PQ+ A+     L  ++ A+ +++  P
Sbjct:    3 KSITLVGSTGSIGTQTLDIVSQYPDQFRIVGLAAGSNVEMLAEQIRQFRPQIAAISAAEKLPALQAAIKDLDPQP 77          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNS3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9311) GN=dxr PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 41/68 (60.29%), Postives = 55/68 (80.88%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            K ISVLGSTGSIGTQTL IV +  D+FRVVAL+AG N++LL  Q++R +P VVA+ +++LL E+K+ L
Sbjct:    2 KAISVLGSTGSIGTQTLAIVEDFPDQFRVVALSAGRNLSLLVSQIQRHRPDVVALADQALLAELKDRL 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_GEOUR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter uraniireducens (strain Rf4) GN=dxr PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K +++LGSTGSIG  TLDIVA H DKF+VVAL AG N+ LL  Q++ F PQ+VAV NE L  ++++ L+
Sbjct:    2 KKLAILGSTGSIGVSTLDIVAAHPDKFQVVALTAGGNLDLLKKQIEEFSPQLVAVLNEELAQKLQQMLS 70          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_GLOVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Gloeobacter violaceus GN=dxr PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.003e-15
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPRFWPGNR 656
            K I++LGSTGSIGTQTLDIVAE+ ++F V  + A SN+ LLA+Q++RF+PQVVAV +E+    +   LA  +  P  + G +
Sbjct:    2 KHIALLGSTGSIGTQTLDIVAEYPERFAVTGMTAHSNMELLAEQIRRFRPQVVAVGSEARRAALAALLAGFDGMPEMFVGEK 83          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain CC9605) GN=dxr PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.918e-15
Identity = 41/68 (60.29%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            K ISVLGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL +QV+R +P+VVA+ +  LL E++E L
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFRVVALTAGRNLKLLVEQVQRHRPEVVALADSDLLPELQERL 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROA2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dxr PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 33/68 (48.53%), Postives = 53/68 (77.94%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            K +S+LGSTGSIG  TLD+V +H D+F +  LA G ++TLLA+Q++ FKP +V+VR+E+  ++++E +
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPDRFTITGLAEGHDVTLLAEQIREFKPSIVSVRDEASANQLRELI 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_BACHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus halodurans GN=dxr PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 38/70 (54.29%), Postives = 54/70 (77.14%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN 620
            K ISVLG+TGSIGTQTLD++A H DKFR+VA++ G N+TL  +Q+ +FKP +V+V    + DE ++ LA+
Sbjct:    2 KGISVLGATGSIGTQTLDVLANHRDKFRLVAMSVGKNLTLAEEQIHQFKPPLVSV----MTDEDRKTLAS 67          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_BREBN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dxr PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K I++LGSTGS+GT TL++V +H + F VVA+AAG+NI LL  QV+ FKP++V+V NE    E+++ LA
Sbjct:    2 KKIALLGSTGSVGTSTLEVVGQHPEDFSVVAMAAGTNIDLLTLQVETFKPELVSVGNEKAAVELRDRLA 70          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_GEOSF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sp. (strain FRC-32) GN=dxr PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 36/69 (52.17%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K +++LGSTGSIG  TL+IVA H +KF+++AL AG NI LL +Q+  F PQ+VAV+NE L  +++  L+
Sbjct:    2 KNLTILGSTGSIGVSTLEIVAAHPEKFKIIALTAGENIDLLKEQIDAFAPQLVAVKNEELALKLEGMLS 70          
The following BLAST results are available for this feature:
BLAST of FC930842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_ANAVT1.376e-1548.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANASP1.376e-1548.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNS33.065e-1560.291-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOUR3.065e-1556.521-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GLOVI4.003e-1550.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNSC8.918e-1560.291-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROA21.987e-1448.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACHD5.781e-1454.291-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BREBN7.550e-1453.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSF9.860e-1452.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109F04EF PostHarvP1 Citrus clementina cDNA clone C34109F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930842 ID=FC930842; Name=FC930842; organism=Citrus clementina; type=EST; length=674bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
AATACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGATAAAAAGA
GGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGCAG
TCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCAAA
TCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATA
ATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCT
CCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTG
GGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAA
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCC
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