FC930842

Overview
NameFC930842
Unique NameFC930842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930842_ssr127 microsatellite FC930842_ssr127:127..142. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930842_ssr10 microsatellite FC930842_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_GEOLS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=dxr PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 626
            K I++LGSTGSIG  TL+IVA H DKFRV++L+   N+ LLA Q+++F+P++ AV + + +  +KE L+ VE
Sbjct:    2 KQIAILGSTGSIGVSTLEIVAAHPDKFRVLSLSGAKNLDLLARQIRQFRPRLAAVADPADIPRLKELLSGVE 73          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROMM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain MIT 9313) GN=dxr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 36/64 (56.25%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  423 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            +LGSTGSIGTQTL+I  E  ++FRVVAL AG+N++L+ +Q++R  P+VVA+ + SLL E+K+ L
Sbjct:    1 MLGSTGSIGTQTLEIAEEFPERFRVVALTAGTNVSLVVEQIQRHHPEVVALADASLLPELKQQL 64          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROM1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL1A) GN=dxr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPR 638
            K ISVLGSTGSIGTQTL I  E  D+F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E  +
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPDQFKIVALTAGKNLDLVTKQIETHQPEVVSLADESLLPELTRRINSLNEDSK 77          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_GEOSL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter sulfurreducens GN=dxr PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 35/68 (51.47%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            K I++LGSTGSIG  TL++V+ H D+FRVVAL AG+N+ +L  Q++ F+PQ+V+V +E L  E+  +L
Sbjct:    2 KNITILGSTGSIGVSTLEVVSAHPDRFRVVALTAGNNLEMLRQQIETFRPQMVSVLSEKLAVELDRSL 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROVI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            + +S+LGSTGSIG  TLD+V  H++ F VV LA G ++  LA+Q+K F+P +V+VR+E+  DE+K  L
Sbjct:    2 RALSILGSTGSIGLSTLDVVRRHKESFSVVGLAEGHDVHALAEQIKEFRPTIVSVRDENAADELKTLL 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PROMT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Prochlorococcus marinus (strain NATL2A) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 36/76 (47.37%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEESPR 638
            K ISVLGSTGSIGTQTL I  E  ++F++VAL AG N+ L+  Q++  +P+VV++ +ESLL E+   + ++ E+ +
Sbjct:    2 KAISVLGSTGSIGTQTLQIAEEFPEQFKIVALTAGKNLDLVIKQIETHQPEVVSLADESLLSELSSRINSLTENKK 77          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CLOD6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium difficile (strain 630) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL-ANVE 626
            K IS+LGSTGSIG QTLD+V ++ DKF +VA++A SNI LL +Q+  FKP+ V V  E+   ++KE L  N+E
Sbjct:    2 KKISILGSTGSIGKQTLDVVRDNRDKFEIVAISANSNIELLLEQIVEFKPKYVTVFEENKALKLKEMLPKNIE 74          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_STRCO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Streptomyces coelicolor GN=dxr PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  402 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            DGPK + VLGSTGSIGTQ +D+V  + D+FRV AL+A G  + LLA+Q  R K + VAV  E ++  ++EAL
Sbjct:   21 DGPKDVVVLGSTGSIGTQAIDLVLRNPDRFRVTALSANGGRVALLAEQAYRLKARTVAVAREDVVPALREAL 92          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CHLPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=dxr PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 34/70 (48.57%), Postives = 51/70 (72.86%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN 620
            K +S+LGSTGSIG  TLD+V +H +KF V  LA G +I LLA+Q+K F+P +V+VR+++    ++E L +
Sbjct:    2 KSLSILGSTGSIGLSTLDVVRQHPEKFNVTGLAEGHDINLLAEQIKEFRPDIVSVRDKASAGLLREQLGS 71          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_EUBE2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=dxr PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 626
            K +S+LGSTGSIGTQTLD++  + D   VVALAAG+ ++ LA+QV+ FKPQ+V +  E L+ E+K  + +++
Sbjct:    2 KNVSILGSTGSIGTQTLDVIRRNAD-INVVALAAGTRVSDLAEQVREFKPQLVCIGKEELVPELKTLIGDMD 72          
The following BLAST results are available for this feature:
BLAST of FC930842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_GEOLS9.860e-1450.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMM1.288e-1356.251-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROM11.288e-1348.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOSL1.682e-1351.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROVI2.197e-1350.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PROMT2.869e-1347.371-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOD62.869e-1353.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_STRCO3.747e-1352.781-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLPB3.747e-1348.571-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBE24.894e-1350.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109F04EF PostHarvP1 Citrus clementina cDNA clone C34109F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930842 ID=FC930842; Name=FC930842; organism=Citrus clementina; type=EST; length=674bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
AATACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGATAAAAAGA
GGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGCAG
TCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCAAA
TCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATA
ATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCT
CCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTG
GGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAA
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCC
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