FC930842

Overview
NameFC930842
Unique NameFC930842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930842_ssr127 microsatellite FC930842_ssr127:127..142. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930842_ssr10 microsatellite FC930842_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_THERP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  417 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 590
            +S+LGSTGSIG QTL++VA H D+FRVVALAA S I  L +QV+ F+P++VA+  ESL
Sbjct:    5 VSLLGSTGSIGRQTLEVVAAHPDRFRVVALAARSQIDALQEQVRIFRPELVAIAQESL 62          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_GEOMG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN 620
            K +++LGSTGSIGT TL+IVA H D+F+V+AL AGSN+ LL  QV+ F+P++V+V    L  ++   L++
Sbjct:    2 KKLTILGSTGSIGTSTLEIVAAHPDRFQVIALTAGSNLELLKQQVEVFRPRLVSVLTADLARQLDRMLSD 71          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_EUBR3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=dxr PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.090e-12
Identity = 36/72 (50.00%), Postives = 54/72 (75.00%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 626
            K IS+LGSTGSIGTQTLD++ EH D  +VVAL+ G N++L+  Q + FKPQ V+V +E+   +++ +LA+ +
Sbjct:    2 KKISILGSTGSIGTQTLDVIREHGD-MQVVALSCGRNLSLIEKQAREFKPQFVSVSDENDAKKLRTSLADTD 72          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SYNPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Synechococcus sp. (strain WH8102) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  423 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            +LGSTGSIGTQTL I  E  ++FRVVAL AG N+ LL  Q++R +P++VA+ N  LL E+++ L
Sbjct:    1 MLGSTGSIGTQTLQIAEEFPEQFRVVALTAGQNLDLLVQQIQRHQPELVALANADLLPELQQRL 64          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CHLT3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K I++LGSTGSIGT +L++++   ++F    L+AGSN+ LLA+Q KRF+P+ V + NESL  E++  LA
Sbjct:    2 KRITILGSTGSIGTNSLEVISRFPEQFCATYLSAGSNVKLLAEQAKRFRPKGVVIMNESLEGELRSLLA 70          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_BACV8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxr PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 623
            K I++LGSTGSIGTQ L ++ EH D + V AL A + + LL +Q ++F P+ V + NE    ++KEAL+++
Sbjct:    3 KQIAILGSTGSIGTQALQVIEEHPDLYEVYALTANNRVDLLVEQARKFMPEAVVIANEEKYLQLKEALSDL 73          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_THEPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=dxr PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL-ANVE 626
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E L  NVE
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRENLKKNVE 74          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_THEP3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=dxr PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL-ANVE 626
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E L  NVE
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRENLKKNVE 74          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PELLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon luteolum (strain DSM 273) GN=dxr PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 30/68 (44.12%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            + +S+LGSTGSIG  TLD+V +H D+F++V LA G ++ +LA+Q++ F P +V+VR+    + +K  L
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHPDRFKIVGLAEGHDVNMLAEQIREFNPSIVSVRDAGSAELLKTLL 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_BACTN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides thetaiotaomicron GN=dxr PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 32/71 (45.07%), Postives = 49/71 (69.01%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 623
            K I++LGSTGSIGTQ L ++ EH D +   AL A + + LL  Q ++F+P+VV + NE    ++KEAL+++
Sbjct:   10 KQIAILGSTGSIGTQALQVIEEHPDLYEAYALTANNRVELLIAQARKFQPEVVVIANEEKYAQLKEALSDL 80          
The following BLAST results are available for this feature:
BLAST of FC930842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_THERP8.347e-1362.071-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_GEOMG8.347e-1350.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EUBR31.090e-1250.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYNPX1.860e-1254.691-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CHLT31.860e-1249.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACV83.172e-1245.071-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEPX4.143e-1246.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP34.143e-1246.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELLD4.143e-1244.121-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACTN4.143e-1245.071-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109F04EF PostHarvP1 Citrus clementina cDNA clone C34109F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930842 ID=FC930842; Name=FC930842; organism=Citrus clementina; type=EST; length=674bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
AATACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGATAAAAAGA
GGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGCAG
TCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCAAA
TCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATA
ATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCT
CCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTG
GGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAA
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCC
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