FC930842

Overview
NameFC930842
Unique NameFC930842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC930842_ssr127 microsatellite FC930842_ssr127:127..142. BLAST: Citrus ESTs to Prunus persica proteins V1
FC930842_ssr10 microsatellite FC930842_ssr10:10..21. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15084 contig Ccv1_Contig15084:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_PELPD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelobacter propionicus (strain DSM 2379) GN=dxr PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 575
            K +S+LGSTGSIG  TL+IVA H D+FRV AL AG N+ LLA Q+++F P++ AV
Sbjct:    2 KQLSILGSTGSIGVSTLEIVAAHPDRFRVSALTAGKNLELLARQIRQFSPRIAAV 56          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR1_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.411e-12
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D+++  ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLRTRIS 71          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_ALKOO (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 575
            K IS+LGSTGSIGTQTLD+V  H +KF++VAL+A  NI  + +Q+  F P++VAV
Sbjct:    2 KNISILGSTGSIGTQTLDVVRNHPEKFKIVALSASGNIDAIENQIHEFHPEIVAV 56          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_THEYD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 31/72 (43.06%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 626
            K + +LGSTGSIG   L+++ +  DKF+V+ LAA S++ +L +Q+K F PQ VAV ++   DE+++ + N+E
Sbjct:    2 KKVVILGSTGSIGKNALEVIRKFPDKFKVLGLAAKSSVNILEEQIKEFNPQYVAVFDKKACDELRKKVKNLE 73          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_DESHD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 626
            K +++LGSTGSIGTQTLDIV ++ ++  V ALAAG N+  +  Q + FKPQ++ +  E    E+K+ +A+++
Sbjct:    2 KRLTILGSTGSIGTQTLDIVRQNPEQLEVFALAAGKNVQEIELQAREFKPQIIGLMEEKAARELKQRVADLD 73          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR1_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=dxr1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++  ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLRTRIS 71          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR1_BACAN (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus anthracis GN=dxr1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALA 617
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++  ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLRTRIS 71          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_CHLL2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dxr PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 31/68 (45.59%), Postives = 48/68 (70.59%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 614
            K +S+LGSTGSIG  TLD+V +H  KF +  LA G ++ LL +Q+  F+P VV+VR+ +  D++++ L
Sbjct:    2 KALSILGSTGSIGLSTLDVVRQHPGKFTITGLAEGHDVGLLNEQINEFRPDVVSVRDAASADQLRKLL 69          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR1_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ZK / E33L) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  411 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIK 605
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKMFQPRIVSVATKDLADTLR 67          
BLAST of FC930842 vs. ExPASy Swiss-Prot
Match: DXR_SACD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=dxr PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.574e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  417 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 623
            I VLGSTGSIG  TLD++A H DKF V AL A S+I LL +Q  +F PQ   +R+E+L   +K+ + ++
Sbjct:    4 ICVLGSTGSIGISTLDVLASHPDKFSVYALTANSSIDLLVEQCLKFSPQYAVIRDEALYLPLKQRIESL 72          
The following BLAST results are available for this feature:
BLAST of FC930842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
DXR_PELPD5.411e-1260.001-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCR5.411e-1246.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_ALKOO7.066e-1258.181-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEYD9.229e-1243.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESHD9.229e-1244.441-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACHK9.229e-1246.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR1_BACAN9.229e-1246.381-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_CHLL21.205e-1145.591-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCZ1.205e-1149.231-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_SACD21.574e-1149.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109F04EF PostHarvP1 Citrus clementina cDNA clone C34109F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930842 ID=FC930842; Name=FC930842; organism=Citrus clementina; type=EST; length=674bp
GAATGCTGTTGATGATGATGAATTTTGGTCAACTTCGTACACCGCCACGA
AATACATTTTAAAGTCACTTTCTCCTCTTCTTCTTTCATTATTTCTTTAT
TGCTGCTCCGAACTGAAACTTGTGTTGAGAGAGAGAGAGAGATAAAAAGA
GGAGAAAAAAAAAAAAGGTTGTTAAAGCTTTGATGGCATTGAATTTGCAG
TCCCCAGCTGAAATCAAGGCTCTCTCTTTCTTGGAGACAACCAGGTCAAA
TCATCGCCTCCCCAAGCTCTCAGGTGGGTTTCCTTTGAAGAGGAAGGATA
ATGCAACGGCGACGTTTGGTAGAATAGTTCAATGTTCTGCTCAGGGACCT
CCTCCTGCATGGCCAGGCCGAGCTGTTACAGAGACTTTTCGTAAGACTTG
GGATGGTCCAAAGCCAATCTCAGTGCTTGGGTCAACTGGTTCTATTGGAA
CTCAGACGTTGGACATAGTTGCGGAGCATGAAGATAAATTCAGAGTTGTG
GCACTGGCAGCTGGTTCAAATATAACTCTTCTTGCTGATCAGGTGAAGAG
ATTCAAACCTCAAGTAGTTGCTGTTAGAAATGAGTCATTACTTGATGAAA
TCAAGGAGGCTTTGGCTAATGTTGAAGAAAGCCCGAGATTTTGGCCGGGG
AACAGGGAGTCATTGAGGCTGCCC
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