FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 43/139 (30.94%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPD-KEILKMVARTTL 642
            NINA + + + ++T LGP+G  K++V   G   ++ DG T+LK + + +P A  +   A +QD   GDGTTS  +   E +KQ +  ++EG+HP++++  F  A +  +  ++     V   D+ + + +L+  A T L
Sbjct:   25 NINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATAL 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 46/131 (35.11%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  256 DVLKTNLGPKGTIKMLVGGAGDI-KLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEG-MHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            D++K+ LGPKG  K+L   + +   +T DG T+LK + + NP A ++   +  QDD  GDGTTS  +   EL++++E+ ID+  +HP+ +++G+ +A  A L  L K            +E L  +A+TTL
Sbjct:   31 DLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTL 161          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.882e-16
Identity = 45/140 (32.14%), Postives = 79/140 (56.43%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRT 648
            NINA   + D ++T LGP+G  K++      + ++ DG T++K + I +P A  +   A +QD   GDGTTS VI  GE +K ++  ++EG+HP++++  F  A     Q +++    V +  E  +E L+  A T++ +
Sbjct:   28 NINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELS--VDIKPENMREFLEKCASTSMNS 165          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.621e-16
Identity = 46/162 (28.40%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  157 NRTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            ++T ++ VL    +       +  NINA   +Q+ LK  LGP G+  ++V       ++ DG T+LK + + +P A  +   + AQD   GDGTTS  I  GELMK+++  ++EG+   +++ G+  A    ++ + +    +       +E+L+  ART +
Sbjct:    5 SQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLERCARTAM 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 46/139 (33.09%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  229 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQI-QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTL 642
            NI   + +   L T+LGP G  K+L     DI +T DG T+LKEM++ +NP + +I + + +QD+  GDGTTS V+    L+ Q++  + +G+HP  + +GFE+     ++ L +    +       KE +   A+T+L
Sbjct:   33 NIGVVRSIATFLSTSLGPTGMDKILQSKDEDIVVTNDGATILKEMEMTENPISRLIVQLSESQDEEIGDGTTSVVVLASALLDQAQALLGQGVHPIKISEGFEVGLGHAVEHLSEISEEI----SDLKETMMKAAKTSL 167          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 43/148 (29.05%), Postives = 78/148 (52.70%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTN 660
            A+  N NA + L ++ +T+LGP G  K++V       LT D  T+++E+++ +P A ++      Q++  GD     V+F GEL+ ++E  I  G+ P  +  G+E+A   T++ LE+     +   E +KE++K +        Y N
Sbjct:   27 AVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYGN 174          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.286e-15
Identity = 47/143 (32.87%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNH 663
            A  + D++K+ LGPKG  K+L+    D  L  T DG T+LK + + NP A ++   +  QDD  GDGTTS  +   EL++++E  I + +HP+ ++ G+  A +A  Q L          +   ++ L  +A TTL +    H
Sbjct:   32 AIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTH 174          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_DICDI (T-complex protein 1 subunit theta OS=Dictyostelium discoideum GN=cct8 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 42/149 (28.19%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  208 KSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSY 654
            K  A+  NI+A K L ++ +T+LGP G  KM++     + +T D  T+++E+ + +P A M+   A  Q+   GDGT   V   GE ++++   ++ G+HP  ++ GFE A     + +E      +      KE+ K +        Y
Sbjct:   18 KDEAILRNIDATKQLSEITRTSLGPNGMNKMIINHLEKLFVTNDAATIIRELDVIHPAAKMLVMAAQMQEQEMGDGTNYVVTLTGEFLQKAATLLEMGLHPSEIITGFEKAGAKLQEIIESMIVYNLKDITDKKEVTKCLKSAIASKQY 166          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNH 663
            A  + D++K+ LGPKG  K+L+    D  L  T DG T+LK + + NP A ++   +  QDD  GDGTTS  +   EL++++E  I + +HP+ ++ G+  A +A  + L          +   ++ L  +A TTL +    H
Sbjct:   32 AIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTH 174          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 46/143 (32.17%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMVARTTLRTSYTNH 663
            A  + D++K+ LGPKG  K+L+    D  L  T DG T+LK + + NP A ++   +  QDD  GDGTTS  +   EL++++E  I + +HP+ ++ G+  A +A  + L          +   ++ L  +A TTL +    H
Sbjct:   32 AIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTH 174          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPH_CHICK2.276e-1630.94T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPB_YEAST2.972e-1635.11T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPH_DICDI3.882e-1632.14T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPH_YEAST6.621e-1628.40T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPE_ENCCU1.129e-1533.09T-complex protein 1 subunit epsilon OS=Encephalito... [more]
TCPQ_SCHPO1.927e-1529.05Probable T-complex protein 1 subunit theta OS=Schi... [more]
TCPB_BOVIN3.286e-1532.87T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPQ_DICDI7.321e-1528.19T-complex protein 1 subunit theta OS=Dictyostelium... [more]
TCPB_MACFA7.321e-1532.17T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN7.321e-1532.17T-complex protein 1 subunit beta OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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