FC930852
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3) HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15 Identity = 49/145 (33.79%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK--EILKMVARTTLRTSYTNH 663 A + D++K+ LGPKG K+L+ D L T DG T+LK + + NP A ++ + QDD GDGTTS + EL++++E I + +HP+ ++ G+ A +A + L + V G + K + L +A TTL + H Sbjct: 32 AIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTH 174
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14 Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1 Query: 337 DGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK-EILKMVARTTLRTSYTNHWQ 669 DG T+L + I +P A + A AQDD GDGTTS + GEL+K+S+ I+EGMHP+++ G++ A + LQFL + V +E +K E+L A+T+L + H++ Sbjct: 2 DGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKYFIEEGMHPQIITKGYKEALKLALQFLHENAHSVADKNETEKREMLIKCAQTSLNSKLLAHYK 113
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4) HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14 Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 1 Query: 241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK--EILKMVARTTLRTSYTNH 663 A + D++K+ LGPKG K+L+ D L T DG T+LK + + NP A ++ + QDD GDGTTS + EL++++E I + +HP+ ++ G+ A +A + L + V G + + + L +A TTL + H Sbjct: 32 AIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTH 174
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14 Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1 Query: 160 RTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHP----RVLVDGFEIAKRA------TLQFLEKFKTPVVMGDEPDK--EILKM 624 R M + V + A++ N+SA AAK + V++T LGP+ KM++ I+LT DGN +L+E+ + +P+A + A QDD GDGTTS V+ E++ + +D +HP + L EI +A +L E+ K ++ G K ILK+ Sbjct: 7 RKMYILVPDKPAQIQNESAI------AAKTISSVIRTCLGPRAMQKMVLTKINSIELTNDGNAILRELDVAHPSARSLIELAKTQDDEVGDGTTSVVLLAAEILNEMTYILDRDVHPIRICKALGRALEICIKAIDGAAISLDSNEETKIKIINGSVASKICNILKV 167
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14 Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 1 Query: 166 MSLRV-LNPNAEVL--------NKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMV 627 MSLR+ NPNA + N + +I A + L + T++GP G K++V G I +T D T+L+E+ I +P ++ Q GDGT +I GEL+ SE+ I G+ ++ G+ +A++ TL+ L++ + E+LKM+ Sbjct: 1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMI 163
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_PIG (T-complex protein 1 subunit gamma (Fragment) OS=Sus scrofa GN=CCT3 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14 Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1 Query: 235 NAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELM 471 NAAK + D+++T LGPK +KML+ G I +T DGN +L+E+Q+Q+P A + + QD+ GDGTTS +I GE++ Sbjct: 1 NAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEML 79
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH60_NITMU (60 kDa chaperonin OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=groL PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14 Identity = 50/159 (31.45%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 196 EVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQI----QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE----------PDKEILKMVA 630 EV +A H +N L D +K LGPKG +L G +TKDG ++ KE+++ +N A M+ A D++GDGTT+ + ++K+ + + GM+P L G + A AT++ L+K P G E D EI K++A Sbjct: 5 EVKFSDSARHKMVNGVNILADAVKVTLGPKGRNVVLERSYGSPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQSIVKEGMKYVAAGMNPMDLKRGIDKAVVATVEELKKLSKPCTTGKEIAQVGSISANSDPEIGKIIA 163
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13 Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1 Query: 217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL 564 A++ NI A K L +T GP G KM++ + +T D T+L+E+++Q+P A MI + Q+ GDGT ++F G L++ +E + G+ +++G+EIA R + L Sbjct: 28 AVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEIL 143
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13 Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1 Query: 217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL 564 A++ NI A K L +T GP G KM++ + +T D T+L+E+++Q+P A MI + Q+ GDGT ++F G L++ +E + G+ +++G+EIA R + L Sbjct: 28 AVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEIL 143
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4) HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13 Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1 Query: 217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL 564 A++ NI A K L +T GP G KM++ + +T D T+L+E+++Q+P A MI + Q+ GDGT ++F G L++ +E + G+ +++G+EIA R + L Sbjct: 28 AVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEIL 143 The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 160
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bpback to top |