FC930852

Overview
NameFC930852
Unique NameFC930852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 49/145 (33.79%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK--EILKMVARTTLRTSYTNH 663
            A  + D++K+ LGPKG  K+L+    D  L  T DG T+LK + + NP A ++   +  QDD  GDGTTS  +   EL++++E  I + +HP+ ++ G+  A +A  + L    + V  G +  K  + L  +A TTL +    H
Sbjct:   32 AIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTH 174          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPH_TETTH (T-complex protein 1 subunit eta (Fragment) OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:  337 DGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK-EILKMVARTTLRTSYTNHWQ 669
            DG T+L  + I +P A  +   A AQDD  GDGTTS  +  GEL+K+S+  I+EGMHP+++  G++ A +  LQFL +    V   +E +K E+L   A+T+L +    H++
Sbjct:    2 DGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKYFIEEGMHPQIITKGYKEALKLALQFLHENAHSVADKNETEKREMLIKCAQTSLNSKLLAHYK 113          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 48/145 (33.10%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  241 AKGLQDVLKTNLGPKGTIKMLVGGAGDIKL--TKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDK--EILKMVARTTLRTSYTNH 663
            A  + D++K+ LGPKG  K+L+    D  L  T DG T+LK + + NP A ++   +  QDD  GDGTTS  +   EL++++E  I + +HP+ ++ G+  A +A  + L    + V  G +  +  + L  +A TTL +    H
Sbjct:   32 AIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTH 174          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_ENCCU (T-complex protein 1 subunit gamma OS=Encephalitozoon cuniculi GN=CCT3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  160 RTMSLRVLNPNAEVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHP----RVLVDGFEIAKRA------TLQFLEKFKTPVVMGDEPDK--EILKM 624
            R M + V +  A++ N+SA       AAK +  V++T LGP+   KM++     I+LT DGN +L+E+ + +P+A  +   A  QDD  GDGTTS V+   E++ +    +D  +HP    + L    EI  +A      +L   E+ K  ++ G    K   ILK+
Sbjct:    7 RKMYILVPDKPAQIQNESAI------AAKTISSVIRTCLGPRAMQKMVLTKINSIELTNDGNAILRELDVAHPSARSLIELAKTQDDEVGDGTTSVVLLAAEILNEMTYILDRDVHPIRICKALGRALEICIKAIDGAAISLDSNEETKIKIINGSVASKICNILKV 167          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_YEAST (T-complex protein 1 subunit theta OS=Saccharomyces cerevisiae GN=CCT8 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 49/163 (30.06%), Postives = 82/163 (50.31%), Query Frame = 1
Query:  166 MSLRV-LNPNAEVL--------NKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDKEILKMV 627
            MSLR+  NPNA +         N    +  +I A + L  +  T++GP G  K++V   G I +T D  T+L+E+ I +P   ++      Q    GDGT   +I  GEL+  SE+ I  G+    ++ G+ +A++ TL+ L++     +       E+LKM+
Sbjct:    1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEITDKNDKNELLKMI 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPG_PIG (T-complex protein 1 subunit gamma (Fragment) OS=Sus scrofa GN=CCT3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  235 NAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELM 471
            NAAK + D+++T LGPK  +KML+   G I +T DGN +L+E+Q+Q+P A  +   +  QD+  GDGTTS +I  GE++
Sbjct:    1 NAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEML 79          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: CH60_NITMU (60 kDa chaperonin OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=groL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.094e-14
Identity = 50/159 (31.45%), Postives = 78/159 (49.06%), Query Frame = 1
Query:  196 EVLNKSAALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQI----QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDE----------PDKEILKMVA 630
            EV    +A H  +N    L D +K  LGPKG   +L    G   +TKDG ++ KE+++    +N  A M+   A    D++GDGTT+  +    ++K+  + +  GM+P  L  G + A  AT++ L+K   P   G E           D EI K++A
Sbjct:    5 EVKFSDSARHKMVNGVNILADAVKVTLGPKGRNVVLERSYGSPTITKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDVAGDGTTTATVLAQSIVKEGMKYVAAGMNPMDLKRGIDKAVVATVEELKKLSKPCTTGKEIAQVGSISANSDPEIGKIIA 163          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_PONAB (T-complex protein 1 subunit theta OS=Pongo abelii GN=CCT8 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL 564
            A++ NI A K L    +T  GP G  KM++     + +T D  T+L+E+++Q+P A MI   +  Q+   GDGT   ++F G L++ +E  +  G+    +++G+EIA R   + L
Sbjct:   28 AVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEIL 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_MACFA (T-complex protein 1 subunit theta OS=Macaca fascicularis GN=CCT8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL 564
            A++ NI A K L    +T  GP G  KM++     + +T D  T+L+E+++Q+P A MI   +  Q+   GDGT   ++F G L++ +E  +  G+    +++G+EIA R   + L
Sbjct:   28 AVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEIL 143          
BLAST of FC930852 vs. ExPASy Swiss-Prot
Match: TCPQ_HUMAN (T-complex protein 1 subunit theta OS=Homo sapiens GN=CCT8 PE=1 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 1
Query:  217 ALHMNINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL 564
            A++ NI A K L    +T  GP G  KM++     + +T D  T+L+E+++Q+P A MI   +  Q+   GDGT   ++F G L++ +E  +  G+    +++G+EIA R   + L
Sbjct:   28 AVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVIEGYEIACRKAHEIL 143          
The following BLAST results are available for this feature:
BLAST of FC930852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
TCPB_RAT9.561e-1533.79T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPH_TETTH1.249e-1439.29T-complex protein 1 subunit eta (Fragment) OS=Tetr... [more]
TCPB_MOUSE1.249e-1433.10T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPG_ENCCU2.130e-1432.34T-complex protein 1 subunit gamma OS=Encephalitozo... [more]
TCPQ_YEAST4.745e-1430.06T-complex protein 1 subunit theta OS=Saccharomyces... [more]
TCPG_PIG4.745e-1445.57T-complex protein 1 subunit gamma (Fragment) OS=Su... [more]
CH60_NITMU8.094e-1431.4560 kDa chaperonin OS=Nitrosospira multiformis (str... [more]
TCPQ_PONAB4.017e-1332.76T-complex protein 1 subunit theta OS=Pongo abelii ... [more]
TCPQ_MACFA4.017e-1332.76T-complex protein 1 subunit theta OS=Macaca fascic... [more]
TCPQ_HUMAN4.017e-1332.76T-complex protein 1 subunit theta OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC34109G03EF PostHarvP1 Citrus clementina cDNA clone C34109G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930852 ID=FC930852; Name=FC930852; organism=Citrus clementina; type=EST; length=697bp
GGAGCTCCAGAAAGCCCTAAAAGGCTAAAACCCCCTATACCCTCGCTCTG
TTGCTGCTTGTCTTGGTTCCGTTTGAATACAAAACACTCTCTAACCAAGT
AGCGATATAGCAGTAAACTTCCGTCCATTCAACGAACAGGGACATAGAAG
AGGAGAAACAGAACGATGTCGTTGCGAGTCTTGAATCCGAACGCGGAAGT
GCTGAACAAATCAGCAGCACTTCACATGAATATCAACGCCGCTAAGGGCC
TTCAAGACGTTCTGAAAACAAATCTCGGCCCCAAAGGCACCATCAAAATG
CTAGTTGGTGGAGCCGGAGACATTAAGCTAACTAAGGATGGCAATACGCT
CTTGAAAGAAATGCAAATTCAAAATCCAACAGCTATTATGATTGCGAGGA
CAGCTGTTGCTCAAGATGATATTAGTGGAGATGGGACTACTTCTACTGTG
ATTTTTATTGGCGAGCTCATGAAACAATCAGAACGCTGCATTGATGAAGG
TATGCATCCACGTGTTTTGGTTGATGGTTTCGAGATTGCCAAAAGAGCAA
CTCTCCAATTTCTTGAAAAGTTCAAGACTCCTGTTGTGATGGGTGATGAG
CCTGATAAAGAGATACTCAAAATGGTAGCAAGAACAACTCTAAGAACAAG
CTATACGAATCATTGGCAGATCAGTTGACTGACATAGTTGTTAATGC
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