FC930855
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.253e-29 Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 211 KPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
K +K L K ++ + +K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C K
Sbjct: 5 KECAKPLATPKVTLNKRGFATTIATKNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTK 131 HSP 2 Score: 33.113 bits (74), Expect = 1.253e-29 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3
Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
KA+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 131 KAFPDAYIRLVCFDANRQVQISGFLVHRP 159
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 4.681e-29 Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 1
Query: 286 KTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
K R M W P NNK FE SYLP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+++Q C K
Sbjct: 40 KDRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTK 141 HSP 2 Score: 33.113 bits (74), Expect = 4.681e-29 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3
Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
KA+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 141 KAFPDAYIRLVCFDANRQVQICGFLVHRP 169
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 7.936e-29 Identity = 64/143 (44.76%), Postives = 80/143 (55.94%), Query Frame = 1
Query: 157 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQEC 564
MSA++ V S + ++ K S A TV+N K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C
Sbjct: 1 MSAAMMNKSVVLSKQCTKPAATPKVVTSKRSFA---STVAN--KNREMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQAC 138 HSP 2 Score: 31.187 bits (69), Expect = 7.936e-29 Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query: 570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
A+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 141 AFPDAYIRLVCFDANRQVQISGFLVHRP 168
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.752e-28 Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 283 SKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQEC 564
+K R M W P NNK FE S+LP L+D+ I+K++DY+L W PCLEF + Y EN G Y D RYWTMWKLPMFGC D SQ+L+EIQ C
Sbjct: 39 NKNRDMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQAC 139 HSP 2 Score: 31.187 bits (69), Expect = 1.752e-28 Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 3
Query: 570 AYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
A+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 142 AFPDAYIRLVCFDANRQVQISGFLVHRP 169
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 4.313e-23 Identity = 44/83 (53.01%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 343 SYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENSRMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
SYLP L+D+ I+K++DY+L W PCLEF + Y +N G Y D RYWTMWKLPMFGC D SQ+L+EIQ C K
Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTK 84 HSP 2 Score: 33.113 bits (74), Expect = 4.313e-23 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3
Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
KA+P+AYIR + F+ +Q Q FL+ +P
Sbjct: 84 KAFPDAYIRLVCFDANRQVQISGFLVHRP 112
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.778e-22 Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1
Query: 433 EVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECKK
Sbjct: 3 EHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKK 48 HSP 2 Score: 41.5874 bits (96), Expect = 2.778e-22 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
+K YPNA+IR + F+N +Q QC+SF+ KP
Sbjct: 47 KKEYPNAFIRIIGFDNNRQVQCISFIAYKP 76
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.778e-18 Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
+++E LSYLP LSD IA++I+YM+++G+IP +EF+E YWTMWKLP+F + ++L E++EC+
Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNE-----------DSDATTCYWTMWKLPLFHATSTQEVLGEVRECR 77 HSP 2 Score: 37.3502 bits (85), Expect = 2.778e-18 Identity = 15/27 (55.56%), Postives = 20/27 (74.07%), Query Frame = 3
Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
YPN YIR + F+N KQ Q +SF++ KP
Sbjct: 80 YPNCYIRVVGFDNIKQCQSVSFIVHKP 106
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.749e-17 Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
+++E LSYLP L+D I K++ Y+L +G+IP +EF+EV E + + YWT+WKLP+FG S ++L E+Q C+
Sbjct: 8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFNEVS----EPTEL-------YWTLWKLPLFGAKTSREVLAEVQSCR 77 HSP 2 Score: 34.6538 bits (78), Expect = 1.749e-17 Identity = 14/27 (51.85%), Postives = 19/27 (70.37%), Query Frame = 3
Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
YP YIR + F+N KQ Q +SF++ KP
Sbjct: 80 YPGHYIRVVGFDNIKQCQILSFIVHKP 106
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.100e-16 Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 1
Query: 325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
K++E LSYLP LSD IA+++ YM+ +G+IP +EF E P + +WT+WKLP+F + + ++LNE++EC+
Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--------EKDPTPELH---HWTLWKLPLFNASSAQEVLNEVRECR 77 HSP 2 Score: 31.9574 bits (71), Expect = 1.100e-16 Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 3
Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
Y + YIR + F+N KQ Q +SF++ KP
Sbjct: 80 YSDCYIRVVGFDNIKQCQTVSFIVYKP 106
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 77.0258 bits (188), Expect = 1.431e-16 Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 1
Query: 325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
++FE SYLP LSD IA +I+YM+++G+ P +EF+E H YWTMWKLP+F C Q+L+E++EC+
Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFNE----HSNPEEF-------YWTMWKLPLFDCKSPQQVLDEVRECR 79 HSP 2 Score: 30.0314 bits (66), Expect = 1.431e-16 Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 3
Query: 573 YPNAYIRCLAFNNQKQGQCMSFLIQKP 653
Y + YIR F+N KQ Q +SF++ +P
Sbjct: 82 YGDCYIRVAGFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |