FC930855

Overview
NameFC930855
Unique NameFC930855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.860e-16
Identity = 32/81 (39.51%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567
            +++E LSYLP L+D  IAK+++++L +G+IP +EF+E           P   +  +WTMWKLP FG   ++++L E++EC+
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEE--------DPQP---ETHFWTMWKLPFFGGATANEVLAEVRECR 77          

HSP 2 Score: 35.039 bits (79), Expect = 1.860e-16
Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  576 PNAYIRCLAFNNQKQGQCMSFLIQKP 653
            PN YIR + F+N KQ Q +SF++ KP
Sbjct:   81 PNCYIRVIGFDNIKQCQTVSFIVHKP 106          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.419e-16
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1
Query:  325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            +KFE  SYLP L+D  IA+++ Y L  G+ P +EF              G  +   WT+WKLP+FG     ++L+EIQ CK+
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFS-----------FTGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQ 77          

HSP 2 Score: 35.039 bits (79), Expect = 2.419e-16
Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            ++ +PNAYIR +AF++ +Q Q + FL+ KP
Sbjct:   76 KQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 7.766e-14
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1
Query:  316 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            +N++KFE  SYLP +  D I K+++Y++ KGW P +E  E           P      YW MWKLPMFG  D   IL E + C K
Sbjct:   14 VNSRKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIEHTE-----------PENAFDHYWYMWKLPMFGETDIDTILKEAEACHK 87          

HSP 2 Score: 24.2534 bits (51), Expect = 7.766e-14
Identity = 8/28 (28.57%), Postives = 17/28 (60.71%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQK 650
            KA+PN ++R + F+N  Q +    ++ +
Sbjct:   87 KAHPNNHVRLIGFDNYAQSKGAEMVVYR 114          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.208e-13
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  475 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            Y D RYWTMWKLPMFGC D SQ+L+EIQ C K
Sbjct:   13 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTK 44          

HSP 2 Score: 33.113 bits (74), Expect = 8.208e-13
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653
            KA+P+AYIR + F+  +Q Q   FL+ +P
Sbjct:   44 KAFPDAYIRLVCFDANRQVQISGFLVHRP 72          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1
Query:  310 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            N   +K+FE  SYLP +S + I K+I+Y++ KGW P +E     +   EN+ +       YW MWKLPMFG  D  +I+ EI+ CK+
Sbjct:   19 NDPKSKRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE-----HCEPENAIL------HYWYMWKLPMFGETDVDKIIAEIEACKR 94          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 1
Query:  328 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            KFE LSYLP+L+ D I +++ Y++ KGW P +E  E           P    G YW MWKLPMFG  D   IL E + C K
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVEHTE-----------PENAFGNYWYMWKLPMFGETDVDTILKEAERCHK 87          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CYAME (Ribulose bisphosphate carboxylase small chain OS=Cyanidioschyzon merolae GN=rbcS PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 3.786e-12
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:  346 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            YLP L+D+ I K+I Y + +GW   +E+ +    H  NS         YW MW LP+F   D + I+ E+QEC+K
Sbjct:   10 YLPDLTDEQIRKQIQYAINQGWAVSVEYTDDP--HPRNS---------YWEMWGLPLFDVKDPATIMFEVQECRK 73          

HSP 2 Score: 31.5722 bits (70), Expect = 3.786e-12
Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  564 QKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 653
            +K +PN YI+ LAFN+ K  +   +SF++ +P
Sbjct:   72 RKQFPNHYIKVLAFNSTKGIESTALSFIVNRP 103          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1
Query:  322 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            ++KFE  SYLP+++   I K+++Y++ KGW P +E  E           P +    YW MWKLPMFG  D  +IL E + C K
Sbjct:   16 SRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTE-----------PEHLMDSYWYMWKLPMFGETDIDRILGEAEACHK 87          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1
Query:  319 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            +++KFE  SYLP L  + I K+++Y++ KGW P +E  E           P      YW MWKLPMFG  D   IL E + C K
Sbjct:   15 SSRKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVEHTE-----------PENAFDHYWYMWKLPMFGETDVDAILAEAEACHK 87          
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1
Query:  322 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570
            ++K E  SYLP ++ D I  +++Y++ KGW P +E       H E      Y    YW MWKLPMFG  D++ +L E+  C K
Sbjct:   16 SRKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE-------HSEPENAFSY----YWYMWKLPMFGDTDANVVLAEVDACIK 87          
The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_SYNY31.860e-1639.51Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_CYAPA2.419e-1639.02Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS1_CHRVI7.766e-1441.18Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_ACECL8.208e-1375.00Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_PSEHY9.286e-1341.38Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS2_THIFE2.702e-1244.44Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_CYAME3.786e-1238.67Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS_THIDA6.019e-1239.76Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS_ALVHS2.987e-1140.48Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS1_HYDMR8.691e-1138.55Ribulose bisphosphate carboxylase small chain 1 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34109G06EF PostHarvP1 Citrus clementina cDNA clone C34109G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bp
GGTGCATACACAAAATGTATTTGTATTAGAGTGATTTAATAATAAGATAG
TCTCAAGTTGACACGCGGGATGATCTCACCTAAAACTTTTCTCAAAGAAA
GTTATCGAGCGGAGAGTAGAAAGGGTGGTGATGAAACCAAAGCTTGCCCG
AAGAAGATGTCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTA
TCTTGGCCTAAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCA
TTGCATGGAGCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATG
AAGACATGGAATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCT
GCCATCGCTCTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCA
AAAAGGGATGGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCAC
AGGGAGAATAGCAGAATGCCAGGGTATTATGATGGGAGGTATTGGACAAT
GTGGAAGTTGCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATG
AAATACAAGAGTGCAAAAAGCATACCCAAATGCTTATATTCGCTGCTTGG
CATTTAACAATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAA
CCTNACCACCACCACTAGCACCTAAAGCACTTCTCTCACTTTGTTTGGTT
GAATTTCTATATGCAG
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