FC930855
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.860e-16 Identity = 32/81 (39.51%), Postives = 54/81 (66.67%), Query Frame = 1 Query: 325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECK 567 +++E LSYLP L+D IAK+++++L +G+IP +EF+E P + +WTMWKLP FG ++++L E++EC+ Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEE--------DPQP---ETHFWTMWKLPFFGGATANEVLAEVRECR 77 HSP 2 Score: 35.039 bits (79), Expect = 1.860e-16 Identity = 14/26 (53.85%), Postives = 19/26 (73.08%), Query Frame = 3 Query: 576 PNAYIRCLAFNNQKQGQCMSFLIQKP 653 PN YIR + F+N KQ Q +SF++ KP Sbjct: 81 PNCYIRVIGFDNIKQCQTVSFIVHKP 106
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.419e-16 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1 Query: 325 KKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 +KFE SYLP L+D IA+++ Y L G+ P +EF G + WT+WKLP+FG ++L+EIQ CK+ Sbjct: 7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFS-----------FTGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQ 77 HSP 2 Score: 35.039 bits (79), Expect = 2.419e-16 Identity = 14/30 (46.67%), Postives = 23/30 (76.67%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 ++ +PNAYIR +AF++ +Q Q + FL+ KP Sbjct: 76 KQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4) HSP 1 Score: 73.559 bits (179), Expect = 7.766e-14 Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1 Query: 316 INNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 +N++KFE SYLP + D I K+++Y++ KGW P +E E P YW MWKLPMFG D IL E + C K Sbjct: 14 VNSRKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIEHTE-----------PENAFDHYWYMWKLPMFGETDIDTILKEAEACHK 87 HSP 2 Score: 24.2534 bits (51), Expect = 7.766e-14 Identity = 8/28 (28.57%), Postives = 17/28 (60.71%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQK 650 KA+PN ++R + F+N Q + ++ + Sbjct: 87 KAHPNNHVRLIGFDNYAQSKGAEMVVYR 114
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 8.208e-13 Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 Query: 475 YYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 Y D RYWTMWKLPMFGC D SQ+L+EIQ C K Sbjct: 13 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTK 44 HSP 2 Score: 33.113 bits (74), Expect = 8.208e-13 Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3 Query: 567 KAYPNAYIRCLAFNNQKQGQCMSFLIQKP 653 KA+P+AYIR + F+ +Q Q FL+ +P Sbjct: 44 KAFPDAYIRLVCFDANRQVQISGFLVHRP 72
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 310 NPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 N +K+FE SYLP +S + I K+I+Y++ KGW P +E + EN+ + YW MWKLPMFG D +I+ EI+ CK+ Sbjct: 19 NDPKSKRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE-----HCEPENAIL------HYWYMWKLPMFGETDVDKIIAEIEACKR 94
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12 Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 1 Query: 328 KFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 KFE LSYLP+L+ D I +++ Y++ KGW P +E E P G YW MWKLPMFG D IL E + C K Sbjct: 18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVEHTE-----------PENAFGNYWYMWKLPMFGETDVDTILKEAERCHK 87
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_CYAME (Ribulose bisphosphate carboxylase small chain OS=Cyanidioschyzon merolae GN=rbcS PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 3.786e-12 Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1 Query: 346 YLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 YLP L+D+ I K+I Y + +GW +E+ + H NS YW MW LP+F D + I+ E+QEC+K Sbjct: 10 YLPDLTDEQIRKQIQYAINQGWAVSVEYTDDP--HPRNS---------YWEMWGLPLFDVKDPATIMFEVQECRK 73 HSP 2 Score: 31.5722 bits (70), Expect = 3.786e-12 Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 3 Query: 564 QKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 653 +K +PN YI+ LAFN+ K + +SF++ +P Sbjct: 72 RKQFPNHYIKVLAFNSTKGIESTALSFIVNRP 103
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12 Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 1 Query: 322 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 ++KFE SYLP+++ I K+++Y++ KGW P +E E P + YW MWKLPMFG D +IL E + C K Sbjct: 16 SRKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIEHTE-----------PEHLMDSYWYMWKLPMFGETDIDRILGEAEACHK 87
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1 Query: 319 NNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 +++KFE SYLP L + I K+++Y++ KGW P +E E P YW MWKLPMFG D IL E + C K Sbjct: 15 SSRKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVEHTE-----------PENAFDHYWYMWKLPMFGETDVDAILAEAEACHK 87
BLAST of FC930855 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11 Identity = 32/83 (38.55%), Postives = 46/83 (55.42%), Query Frame = 1 Query: 322 NKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSRMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKK 570 ++K E SYLP ++ D I +++Y++ KGW P +E H E Y YW MWKLPMFG D++ +L E+ C K Sbjct: 16 SRKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE-------HSEPENAFSY----YWYMWKLPMFGDTDANVVLAEVDACIK 87 The following BLAST results are available for this feature:
BLAST of FC930855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >FC930855 ID=FC930855; Name=FC930855; organism=Citrus clementina; type=EST; length=716bpback to top |